Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G38040 - ( CAC3 acetyl-CoA carboxylase )
18 Proteins interacs with AT2G38040Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33210![]() ![]() ![]() ![]() | Predictedpull down | FSW = 0.0225
| Class C:plastid | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT2G36990![]() ![]() ![]() ![]() | Predictedpull down | FSW = 0.0870
| Class C:plastid | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR |
AT3G13490![]() ![]() ![]() ![]() | Predictedpull down | FSW = 0.0679
| Class C:plastid | OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G48350![]() ![]() ![]() ![]() | Predictedpull down | FSW = 0.2743
| Class C:plastid | RIBOSOMAL PROTEIN L18 FAMILY PROTEIN |
AT1G03475![]() ![]() ![]() ![]() | Predictedpull down | FSW = 0.0423
| Class C:plastid | LIN2 (LESION INITIATION 2) COPROPORPHYRINOGEN OXIDASE |
AT1G17220![]() ![]() ![]() ![]() | Predictedpull down | FSW = 0.1736
| Class C:plastid | FUG1 (FU-GAERI1) TRANSLATION INITIATION FACTOR |
AT5G35360![]() ![]() ![]() ![]() | Predictedpull down | FSW = 0.1984
| Class C:plastid | CAC2 ACETYL-COA CARBOXYLASE/ BIOTIN CARBOXYLASE |
AT2G43030![]() ![]() ![]() ![]() | Predictedpull down | FSW = 0.1157
| Class C:plastid | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
ATCG00500 | Predictedpull down | FSW = 0.3741
| Class C:plastid | ENCODES THE CARBOXYTRANSFERASE BETA SUBUNIT OF THE ACETYL-COA CARBOXYLASE (ACCASE) COMPLEX IN PLASTIDS THIS COMPLEX CATALYZES THE CARBOXYLATION OF ACETYL-COA TO PRODUCE MALONYL-COA THE FIRST COMMITTED STEP IN FATTY ACID SYNTHESIS |
ATCG00810 | Predictedpull down | FSW = 0.1995
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
AT4G37910![]() ![]() ![]() ![]() | Predictedpull down | FSW = 0.0563
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT4G38680![]() ![]() ![]() ![]() | Predictedpull down | FSW = 0.1961
| Unknown | GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
AT1G65290![]() ![]() ![]() ![]() | Predictedpull down | FSW = 0.0870
| Unknown | MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2) ACYL CARRIER/ METAL ION BINDING |
AT1G32380![]() ![]() ![]() ![]() | Predictedpull down | FSW = 0.0399
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 2 (PRS2) |
AT1G26550![]() ![]() ![]() ![]() | Predictedpull down | FSW = 0.1739
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PPIC-TYPE FAMILY PROTEIN |
AT3G22310![]() ![]() ![]() ![]() | Predictedpull down | FSW = 0.1929
| Unknown | PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING |
AT4G36020![]() ![]() ![]() ![]() | Predictedpull down | FSW = 0.1108
| Unknown | CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
AT5G51140![]() ![]() ![]() ![]() | Predictedpull down | FSW = 0.1756
| Unknown | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
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Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454