Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G38040 - ( CAC3 acetyl-CoA carboxylase )

18 Proteins interacs with AT2G38040
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33210

Predicted

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FSW = 0.0225

Class C:

plastid

 HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT2G36990

Predicted

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FSW = 0.0870

Class C:

plastid

 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR
AT3G13490

Predicted

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FSW = 0.0679

Class C:

plastid

 OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G48350

Predicted

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FSW = 0.2743

Class C:

plastid

 RIBOSOMAL PROTEIN L18 FAMILY PROTEIN
AT1G03475

Predicted

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FSW = 0.0423

Class C:

plastid

 LIN2 (LESION INITIATION 2) COPROPORPHYRINOGEN OXIDASE
AT1G17220

Predicted

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FSW = 0.1736

Class C:

plastid

 FUG1 (FU-GAERI1) TRANSLATION INITIATION FACTOR
AT5G35360

Predicted

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FSW = 0.1984

Class C:

plastid

 CAC2 ACETYL-COA CARBOXYLASE/ BIOTIN CARBOXYLASE
AT2G43030

Predicted

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FSW = 0.1157

Class C:

plastid

 RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
ATCG00500Predicted

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FSW = 0.3741

Class C:

plastid

 ENCODES THE CARBOXYTRANSFERASE BETA SUBUNIT OF THE ACETYL-COA CARBOXYLASE (ACCASE) COMPLEX IN PLASTIDS THIS COMPLEX CATALYZES THE CARBOXYLATION OF ACETYL-COA TO PRODUCE MALONYL-COA THE FIRST COMMITTED STEP IN FATTY ACID SYNTHESIS
ATCG00810Predicted

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FSW = 0.1995

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT4G37910

Predicted

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FSW = 0.0563

Unknown

 MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT4G38680

Predicted

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FSW = 0.1961

Unknown

 GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT1G65290

Predicted

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FSW = 0.0870

Unknown

 MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2) ACYL CARRIER/ METAL ION BINDING
AT1G32380

Predicted

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FSW = 0.0399

Unknown

 RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 2 (PRS2)
AT1G26550

Predicted

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FSW = 0.1739

Unknown

 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PPIC-TYPE FAMILY PROTEIN
AT3G22310

Predicted

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FSW = 0.1929

Unknown

 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING
AT4G36020

Predicted

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FSW = 0.1108

Unknown

 CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT5G51140

Predicted

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FSW = 0.1756

Unknown

 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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