Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G36990 - ( SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor )

27 Proteins interacs with AT2G36990
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33800

Predicted

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FSW = 0.2733

Class C:

plastid

nucleus

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT3G63490

Predicted

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FSW = 0.1571

Class C:

plastid

nucleus

 RIBOSOMAL PROTEIN L1 FAMILY PROTEIN
AT3G17170

Predicted

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FSW = 0.1366

Class C:

plastid

 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G27850

Predicted

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FSW = 0.0435

Class C:

plastid

 RPL12-C (RIBOSOMAL PROTEIN L12-C) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G17220

Predicted

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FSW = 0.0870

Class C:

plastid

 FUG1 (FU-GAERI1) TRANSLATION INITIATION FACTOR
AT1G56500

Predicted

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FSW = 0.0889

Class C:

plastid

 HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT2G38040

Predicted

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FSW = 0.0870

Class C:

plastid

 CAC3 ACETYL-COA CARBOXYLASE
AT4G01310

Predicted

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FSW = 0.1273

Class C:

plastid

 RIBOSOMAL PROTEIN L5 FAMILY PROTEIN
AT5G30510

Predicted

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FSW = 0.2036

Class C:

plastid

 RPS1 (RIBOSOMAL PROTEIN S1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G24240

Predicted

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FSW = 0.0465

Class C:

plastid

 RIBOSOMAL PROTEIN L19 FAMILY PROTEIN
AT2G33450

Predicted

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FSW = 0.0342

Class C:

plastid

 50S RIBOSOMAL PROTEIN L28 CHLOROPLAST (CL28)
ATCG00160Predicted

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FSW = 0.0730

Class C:

plastid

 CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00180Predicted

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FSW = 0.2907

Class C:

plastid

 RNA POLYMERASE BETA SUBUNIT-1
ATCG00190Predicted

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FSW = 0.3394

Class C:

plastid

 CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION
ATCG00380Predicted

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FSW = 0.1551

Class C:

plastid

 CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
ATCG00740Predicted

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FSW = 0.5373

Class C:

plastid

 RNA POLYMERASE ALPHA SUBUNIT
ATCG00800Predicted

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FSW = 0.1288

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00810Predicted

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FSW = 0.1000

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG00830Predicted

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FSW = 0.1330

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
ATCG01240Predicted

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FSW = 0.1284

Class C:

plastid

 30S CHLOROPLAST RIBOSOMAL PROTEIN S7
AT5G58070

Predicted

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FSW = 0.0282

Unknown

 TIL (TEMPERATURE-INDUCED LIPOCALIN) BINDING / TRANSPORTER
AT1G79530

Predicted

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FSW = 0.0866

Unknown

 GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT4G02930

Predicted

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FSW = 0.0504

Unknown

 ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT4G30930

Predicted

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FSW = 0.0588

Unknown

 NFD1 (NUCLEAR FUSION DEFECTIVE 1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G20060

Predicted

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FSW = 0.2251

Unknown

 RIBOSOMAL PROTEIN L4 FAMILY PROTEIN
AT3G02060

Predicted

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FSW = 0.1021

Unknown

 DEAD/DEAH BOX HELICASE PUTATIVE
AT5G64670

Predicted

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FSW = 0.1129

Unknown

 RIBOSOMAL PROTEIN L15 FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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