Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G33450 - ( 50S ribosomal protein L28 chloroplast (CL28) )
30 Proteins interacs with AT2G33450Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G41790 | Predictedpull down | FSW = 0.0496
| Class C:plastid | CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING |
AT2G36990 | Predictedpull down | FSW = 0.0342
| Class C:plastid | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR |
AT2G21170 | Predictedpull down | FSW = 0.0460
| Class C:plastid | TIM (TRIOSEPHOSPHATE ISOMERASE) CATALYTIC/ TRIOSE-PHOSPHATE ISOMERASE |
AT4G31210 | Predictedpull down | FSW = 0.0992
| Class C:plastid | DNA TOPOISOMERASE FAMILY PROTEIN |
AT5G23140 | Predictedpull down | FSW = 0.0425
| Class C:plastid | NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE |
AT1G50840 | Predictedpull down | FSW = 0.0662
| Class C:plastid | POLGAMMA2 (POLYMERASE GAMMA 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT2G19870 | Predictedpull down | FSW = 0.0242
| Class C:plastid | TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN |
AT2G04270 | Predictedaffinity chromatography technology | FSW = 0.0286
| Class C:plastid | RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE |
AT1G22170 | Predictedpull down | FSW = 0.0124
| Class C:plastid | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT1G18440 | Predictedpull down | FSW = 0.0285
| Class C:plastid | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
AT5G55220 | Predictedpull down | FSW = 0.0554
| Class C:plastid | TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN |
AT4G02260 | Predictedpull down | FSW = 0.0865
| Class C:plastid | RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC |
ATCG00470 | Predictedpull down | FSW = 0.0256
| Class C:plastid | ATPASE EPSILON SUBUNIT |
ATCG00740 | Predictedpull down | FSW = 0.1473
| Class C:plastid | RNA POLYMERASE ALPHA SUBUNIT |
AT4G18360 | Predictedpull down | FSW = 0.0324
| Unknown | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
AT3G09210 | Predictedpull down | FSW = 0.0794
| Unknown | PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR |
AT1G65290 | Predictedpull down | FSW = 0.0842
| Unknown | MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2) ACYL CARRIER/ METAL ION BINDING |
AT4G11060 | Predictedpull down | FSW = 0.1179
| Unknown | MTSSB (MITOCHONDRIALLY TARGETED SINGLE-STRANDED DNA BINDING PROTEIN) SINGLE-STRANDED DNA BINDING |
AT2G45240 | Predictedpull down | FSW = 0.0392
| Unknown | MAP1A (METHIONINE AMINOPEPTIDASE 1A) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE |
AT1G79500 | Predictedpull down | FSW = 0.0135
| Unknown | 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA) |
AT2G18230 | Predictedpull down | FSW = 0.0281
| Unknown | ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT1G01290 | Predictedpull down | FSW = 0.0346
| Unknown | CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3) CATALYTIC |
AT1G10930 | Predictedpull down | FSW = 0.0163
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT2G43760 | Predictedpull down | FSW = 0.0275
| Unknown | MOLYBDOPTERIN BIOSYNTHESIS MOAE FAMILY PROTEIN |
AT3G22310 | Predictedpull down | FSW = 0.1113
| Unknown | PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING |
AT4G12780 | Predictedpull down | FSW = 0.0256
| Unknown | HEAT SHOCK PROTEIN BINDING |
AT4G29540 | Predictedpull down | FSW = 0.0194
| Unknown | BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN |
AT4G31150 | Predictedpull down | FSW = 0.0588
| Unknown | ENDONUCLEASE V FAMILY PROTEIN |
AT5G51140 | Predictedpull down | FSW = 0.0545
| Unknown | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT5G63120 | Predictedpull down | FSW = 0.1297
| Unknown | ETHYLENE-RESPONSIVE DEAD BOX RNA HELICASE PUTATIVE (RH30) |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454