Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G04270 - ( RNEE/G (RNASE E/G-LIKE) endoribonuclease )
33 Proteins interacs with AT2G04270Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33800 | Predictedpull down | FSW = 0.3273
| Class C:plastid | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
AT3G63490 | Predictedpull down | FSW = 0.2438
| Class C:plastid | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT1G56190 | Predictedpull down | FSW = 0.1258
| Class C:plastid | PHOSPHOGLYCERATE KINASE PUTATIVE |
AT3G17170 | Predictedpull down | FSW = 0.1494
| Class C:plastid | RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G13120 | Predictedpull down | FSW = 0.0557
| Class C:plastid | 30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE |
AT3G27850 | Predictedpull down | FSW = 0.0101
| Class C:plastid | RPL12-C (RIBOSOMAL PROTEIN L12-C) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G34620 | Predictedpull down | FSW = 0.2504
| Class C:plastid | SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G35040 | Predictedpull down | FSW = 0.0247
| Class C:plastid | AICARFT/IMPCHASE BIENZYME FAMILY PROTEIN |
AT3G03710 | Predictedmass spectrometry studies of complexes | FSW = 0.5037
| Class C:plastid | RIF10 (RESISTANT TO INHIBITION WITH FSM 10) 3-5-EXORIBONUCLEASE/ RNA BINDING / NUCLEIC ACID BINDING / POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
AT3G44890 | Predictedpull down | FSW = 0.2501
| Class C:plastid | RPL9 (RIBOSOMAL PROTEIN L9) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G14100 | Predictedaffinity chromatography technology | FSW = 0.1298
| Class C:plastid | ATNAP14 TRANSPORTER |
AT2G22230 | Predictedpull down | FSW = 0.4876
| Class C:plastid | BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE |
AT1G32990 | Predictedpull down | FSW = 0.1793
| Class C:plastid | PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G78630 | Predictedpull down | FSW = 0.2237
| Class C:plastid | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G10050 | Predictedpull down | FSW = 0.0237
| Class C:plastid | OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE |
AT2G33450 | Predictedaffinity chromatography technology | FSW = 0.0286
| Class C:plastid | 50S RIBOSOMAL PROTEIN L28 CHLOROPLAST (CL28) |
AT2G43030 | Predictedpull down | FSW = 0.0753
| Class C:plastid | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT2G45290 | Predictedaffinity chromatography technology | FSW = 0.0282
| Class C:plastid | TRANSKETOLASE PUTATIVE |
ATCG00160 | Predictedpull down | FSW = 0.1018
| Class C:plastid | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
ATCG00380 | Predictedpull down | FSW = 0.1754
| Class C:plastid | CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4 |
ATCG00800 | Predictedpull down | FSW = 0.2237
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG00810 | Predictedpull down | FSW = 0.1069
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG00830 | Predictedpull down | FSW = 0.2096
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG01240 | Predictedpull down | FSW = 0.1692
| Class C:plastid | 30S CHLOROPLAST RIBOSOMAL PROTEIN S7 |
AT2G36530 | Predictedfootprinting | FSW = 0.0858
| Unknown | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
AT4G37910 | Predictedpull down | FSW = 0.1158
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT4G02930 | Predictedpull down | FSW = 0.0562
| Unknown | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
AT4G30930 | Predictedpull down | FSW = 0.1000
| Unknown | NFD1 (NUCLEAR FUSION DEFECTIVE 1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G17510 | Predictedpull down | FSW = 0.3751
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
AT2G20060 | Predictedpull down | FSW = 0.3457
| Unknown | RIBOSOMAL PROTEIN L4 FAMILY PROTEIN |
AT3G22310 | Predictedpull down | FSW = 0.4736
| Unknown | PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING |
AT5G23535 | Predictedpull down | FSW = 0.1241
| Unknown | KOW DOMAIN-CONTAINING PROTEIN |
AT5G64670 | Predictedaffinity chromatography technology | FSW = 0.0967
| Unknown | RIBOSOMAL PROTEIN L15 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454