Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G44890 - ( RPL9 (RIBOSOMAL PROTEIN L9) structural constituent of ribosome )

31 Proteins interacs with AT3G44890
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78380

Predicted

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FSW = 0.1287

Class C:

plastid

 ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19) GLUTATHIONE BINDING / GLUTATHIONE TRANSFERASE
AT5G41790

Predicted

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FSW = 0.0483

Class C:

plastid

 CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
ATCG00120Predicted

comigration in non denaturing gel electrophoresis

FSW = 0.0290

Class C:

plastid

 ENCODES THE ATPASE ALPHA SUBUNIT WHICH IS A SUBUNIT OF ATP SYNTHASE AND PART OF THE CF1 PORTION WHICH CATALYZES THE CONVERSION OF ADP TO ATP USING THE PROTON MOTIVE FORCE THIS COMPLEX IS LOCATED IN THE THYLAKOID MEMBRANE OF THE CHLOROPLAST
AT1G56190

Predicted

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FSW = 0.1323

Class C:

plastid

 PHOSPHOGLYCERATE KINASE PUTATIVE
AT2G04842

Predicted

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FSW = 0.0872

Class C:

plastid

 EMB2761 (EMBRYO DEFECTIVE 2761) ATP BINDING / AMINOACYL-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEOTIDE BINDING / THREONINE-TRNA LIGASE
AT3G13490

Predicted

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FSW = 0.1422

Class C:

plastid

 OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G30690

Predicted

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FSW = 0.0659

Class C:

plastid

 TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN
AT2G04270

Predicted

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FSW = 0.2501

Class C:

plastid

 RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE
AT3G03710

Predicted

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FSW = 0.1778

Class C:

plastid

 RIF10 (RESISTANT TO INHIBITION WITH FSM 10) 3-5-EXORIBONUCLEASE/ RNA BINDING / NUCLEIC ACID BINDING / POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
AT3G18680

Predicted

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FSW = 0.0711

Class C:

plastid

 ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN
AT5G08650

Predicted

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FSW = 0.0514

Class C:

plastid

 GTP-BINDING PROTEIN LEPA PUTATIVE
AT2G19870

Predicted

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FSW = 0.0490

Class C:

plastid

 TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN
AT2G22230

Predicted

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FSW = 0.1523

Class C:

plastid

 BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE
AT1G78630

Predicted

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FSW = 0.4692

Class C:

plastid

 EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02260

Predicted

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FSW = 0.1646

Class C:

plastid

 RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC
ATCG00180Predicted

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FSW = 0.1655

Class C:

plastid

 RNA POLYMERASE BETA SUBUNIT-1
ATCG00830Predicted

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FSW = 0.2178

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT2G36530

Predicted

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FSW = 0.1098

Unknown

 LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE
AT4G37910

Predicted

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FSW = 0.0942

Unknown

 MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT4G38680

Predicted

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FSW = 0.1587

Unknown

 GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT5G26860

Predicted

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FSW = 0.0758

Unknown

 LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT2G45240

Predicted

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FSW = 0.0635

Unknown

 MAP1A (METHIONINE AMINOPEPTIDASE 1A) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE
AT1G79500

Predicted

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FSW = 0.0278

Unknown

 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA)
AT2G18230

Predicted

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FSW = 0.0274

Unknown

 ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G32490

Predicted

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FSW = 0.1404

Unknown

 ESP3 (ENHANCED SILENCING PHENOTYPE 3) ATP BINDING / ATP-DEPENDENT RNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G66520

Predicted

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FSW = 0.0261

Unknown

 PDE194 (PIGMENT DEFECTIVE 194) CATALYTIC/ FORMYLTETRAHYDROFOLATE DEFORMYLASE/ HYDROXYMETHYL- FORMYL- AND RELATED TRANSFERASE
AT2G17510

Predicted

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FSW = 0.1162

Unknown

 EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE
AT3G22310

Predicted

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FSW = 0.1815

Unknown

 PMH1 (PUTATIVE MITOCHONDRIAL RNA HELICASE 1) ATP-DEPENDENT HELICASE/ DNA BINDING / RNA BINDING
AT4G21220

Predicted

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FSW = 0.0659

Unknown

 BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT5G39940

Predicted

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FSW = 0.0539

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S HI0933-LIKE PROTEIN (INTERPROIPR004792) HAS 2776 BLAST HITS TO 2776 PROTEINS IN 871 SPECIES ARCHAE - 18 BACTERIA - 1933 METAZOA - 0 FUNGI - 2 PLANTS - 19 VIRUSES - 0 OTHER EUKARYOTES - 804 (SOURCE NCBI BLINK)
AT5G51140

Predicted

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FSW = 0.1701

Unknown

 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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