Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G26860 - ( LON1 (LON PROTEASE 1) ATP binding / ATP-dependent peptidase/ serine-type peptidase )
43 Proteins interacs with AT5G26860Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0052
| Class B:vacuoleplasma membraneperoxisomenucleusmitochondrioncytosolcytoskeletonClass D:cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G33210 | Predictedpull down | FSW = 0.0461
| Class C:mitochondrion | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT4G37910 | Predictedpull down | FSW = 0.0959
| Class C:mitochondrion | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT1G07510 | Predictedinterologs mapping | FSW = 0.0960
| Class C:mitochondrion | FTSH10 (FTSH PROTEASE 10) ATP BINDING / ATPASE/ METALLOENDOPEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / ZINC ION BINDING |
AT2G29080 | Predictedinterologs mapping | FSW = 0.0680
| Class C:mitochondrion | FTSH3 (FTSH PROTEASE 3) ATP-DEPENDENT PEPTIDASE/ ATPASE |
AT1G74260 | Predictedpull down | FSW = 0.0479
| Class C:mitochondrion | PUR4 (PURINE BIOSYNTHESIS 4) ATP BINDING / CATALYTIC/ PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE |
AT3G05790 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1760
| Class C:mitochondrion | LON4 (LON PROTEASE 4) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT5G23140 | Predictedpull down | FSW = 0.1760
| Class C:mitochondrion | NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE |
AT5G03290 | PredictedAffinity Capture-MS | FSW = 0.0187
| Class C:mitochondrion | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT5G47040 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1333
| Class C:mitochondrion | LON2 (LON PROTEASE 2) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT3G05780 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2789
| Class C:mitochondrion | LON3 (LON PROTEASE 3) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT4G02930 | Predictedpull down | FSW = 0.1143
| Class C:mitochondrion | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
AT4G11060 | Predictedpull down | FSW = 0.1130
| Class C:mitochondrion | MTSSB (MITOCHONDRIALLY TARGETED SINGLE-STRANDED DNA BINDING PROTEIN) SINGLE-STRANDED DNA BINDING |
AT4G30930 | Predictedpull down | FSW = 0.0392
| Class C:mitochondrion | NFD1 (NUCLEAR FUSION DEFECTIVE 1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09200 | PredictedAffinity Capture-MS | FSW = 0.0036
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT3G44890 | Predictedpull down | FSW = 0.0758
| Unknown | RPL9 (RIBOSOMAL PROTEIN L9) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G08490 | Predictedpull down | FSW = 0.1277
| Unknown | CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE) CYSTEINE DESULFURASE/ SELENOCYSTEINE LYASE/ TRANSAMINASE |
AT5G66470 | Predictedpull down | FSW = 0.1074
| Unknown | GTP BINDING / RNA BINDING |
AT2G22230 | Predictedpull down | FSW = 0.2378
| Unknown | BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE |
AT1G78630 | Predictedpull down | FSW = 0.0735
| Unknown | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G43030 | Predictedpull down | FSW = 0.0497
| Unknown | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT4G15560 | Predictedpull down | FSW = 0.0638
| Unknown | CLA1 (CLOROPLASTOS ALTERADOS 1) 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE |
AT5G03940 | Predictedpull down | FSW = 0.1201
| Unknown | CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / SIGNAL SEQUENCE BINDING |
ATCG00180 | Predictedpull down | FSW = 0.1904
| Unknown | RNA POLYMERASE BETA SUBUNIT-1 |
ATCG00160 | Predictedpull down | FSW = 0.1081
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
ATCG00770 | Predictedpull down | FSW = 0.0232
| Unknown | CHLOROPLAST 30S RIBOSOMAL PROTEIN S8 |
ATCG00800 | Predictedpull down | FSW = 0.0319
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG00810 | Predictedpull down | FSW = 0.0524
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG01240 | Predictedpull down | FSW = 0.0755
| Unknown | 30S CHLOROPLAST RIBOSOMAL PROTEIN S7 |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0068
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G14460 | Predictedpull down | FSW = 0.0766
| Unknown | DNA POLYMERASE-RELATED |
AT4G30110 | Predictedpull down | FSW = 0.0435
| Unknown | HMA2 CADMIUM-TRANSPORTING ATPASE |
AT3G50670 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G16740 | Predictedpull down | FSW = 0.0348
| Unknown | RIBOSOMAL PROTEIN L20 FAMILY PROTEIN |
AT4G25730 | Predictedpull down | FSW = 0.1358
| Unknown | FTSJ-LIKE METHYLTRANSFERASE FAMILY PROTEIN |
AT4G26780 | Predictedpull down | FSW = 0.1026
| Unknown | AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION |
AT5G01300 | Predictedpull down | FSW = 0.1333
| Unknown | PHOSPHATIDYLETHANOLAMINE-BINDING FAMILY PROTEIN |
AT5G23230 | Predictedpull down | FSW = 0.0972
| Unknown | NIC2 (NICOTINAMIDASE 2) CATALYTIC/ NICOTINAMIDASE |
AT4G24920 | Predictedinterologs mapping | FSW = 0.0451
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 GAMMA SUBUNIT PUTATIVE |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0291
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.0267
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G10960 | PredictedSynthetic Lethality | FSW = 0.0194
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0268
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454