Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G10960 - ( CCR4-NOT transcription complex protein putative )

99 Proteins interacs with AT5G10960
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G78900

Predicted

Affinity Capture-MS

synthetic growth defect

FSW = 0.0262

Unknown

 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT2G07698

Predicted

synthetic growth defect

FSW = 0.0328

Unknown

 ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE
AT2G01690

Predicted

synthetic growth defect

FSW = 0.0144

Unknown

 BINDING
AT5G13450

Predicted

Synthetic Lethality

FSW = 0.0149

Unknown

 ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE
AT2G06530

Predicted

synthetic growth defect

FSW = 0.0611

Unknown

 VPS21
AT5G19830

Predicted

synthetic growth defect

FSW = 0.0085

Unknown

 AMINOACYL-TRNA HYDROLASE
AT3G02660

Predicted

Synthetic Lethality

FSW = 0.0501

Unknown

 EMB2768 (EMBRYO DEFECTIVE 2768) ATP BINDING / RNA BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / TYROSINE-TRNA LIGASE
AT5G63110

Predicted

Synthetic Lethality

FSW = 0.1050

Unknown

 HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT3G48750

Predicted

in vivo

Affinity Capture-MS

FSW = 0.0369

Unknown

 CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT1G73230

Predicted

two hybrid

FSW = 0.0425

Unknown

 NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN
AT5G63880

Predicted

Synthetic Lethality

FSW = 0.1463

Unknown

 VPS201
AT2G30260

Predicted

Synthetic Lethality

FSW = 0.0512

Unknown

 U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G67270

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.1750

Unknown

 ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT3G12810

Predicted

synthetic growth defect

FSW = 0.1125

Unknown

 PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G44530

Predicted

synthetic growth defect

FSW = 0.1481

Unknown

 HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G43810

Predicted

Synthetic Lethality

FSW = 0.1140

Unknown

 SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT3G17590

Predicted

Synthetic Lethality

FSW = 0.0387

Unknown

 BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT1G19120

Predicted

Synthetic Lethality

FSW = 0.1453

Unknown

 SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870

Predicted

Synthetic Lethality

FSW = 0.1763

Unknown

 SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G02060

Predicted

Affinity Capture-MS

FSW = 0.0090

Unknown

 PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G19210

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.2386

Unknown

 ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G07370

Predicted

Reconstituted Complex

Phenotypic Enhancement

FSW = 0.1491

Unknown

 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT1G65440

Predicted

Synthetic Rescue

FSW = 0.0126

Unknown

 GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR
AT2G27470

Predicted

Reconstituted Complex

FSW = 0.0266

Unknown

 NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR
AT4G18040

Predicted

interologs mapping

FSW = 0.0321

Unknown

 EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT2G44950

Predicted

synthetic growth defect

FSW = 0.2397

Unknown

 HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT5G26860

Predicted

Synthetic Lethality

FSW = 0.0194

Unknown

 LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT1G71270

Predicted

Synthetic Lethality

FSW = 0.0206

Unknown

 POK (POKY POLLEN TUBE)
AT5G66020

Predicted

Synthetic Lethality

FSW = 0.0438

Unknown

 ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT2G31970

Predicted

Synthetic Lethality

FSW = 0.2039

Unknown

 RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G19910

Predicted

synthetic growth defect

FSW = 0.1294

Unknown

 SOH1 FAMILY PROTEIN
AT5G54260

Predicted

Synthetic Lethality

FSW = 0.2243

Unknown

 MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G77140

Predicted

synthetic growth defect

FSW = 0.0619

Unknown

 VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER
AT5G45550

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.0206

Unknown

 MOB1/PHOCEIN FAMILY PROTEIN
AT3G20050

Predicted

Affinity Capture-MS

FSW = 0.0159

Unknown

 ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT3G54860

Predicted

Synthetic Lethality

FSW = 0.1196

Unknown

 VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE
AT5G20850

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.1564

Unknown

 ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0173

Unknown

 RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT3G54180

Predicted

in vivo

Affinity Capture-MS

FSW = 0.0223

Unknown

 CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING
AT4G34110

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0097

Unknown

 PAB2 (POLY(A) BINDING 2) RNA BINDING / TRANSLATION INITIATION FACTOR
AT3G58580

Predicted

two hybrid

FSW = 0.0392

Unknown

 HYDROLASE
AT5G18230

Predicted

Synthetic Lethality

Synthetic Lethality

Affinity Capture-Western

in vivo

two hybrid

Affinity Capture-MS

Affinity Capture-Western

Synthetic Lethality

FSW = 0.1221

Unknown

 TRANSCRIPTION REGULATOR NOT2/NOT3/NOT5 FAMILY PROTEIN
AT5G60170

Predicted

two hybrid

FSW = 0.0100

Unknown

 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / PROTEIN BINDING / ZINC ION BINDING
AT5G35430

Predicted

Affinity Capture-MS

FSW = 0.0092

Unknown

 BINDING
AT1G02080Predicted

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Affinity Capture-Western

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Synthetic Lethality

Co-purification

Synthetic Rescue

FSW = 0.1092

Unknown

 TRANSCRIPTIONAL REGULATOR-RELATED
AT1G04020

Predicted

synthetic growth defect

FSW = 0.2187

Unknown

 BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G04730Predicted

synthetic growth defect

FSW = 0.2458

Unknown

 AAA-TYPE ATPASE FAMILY PROTEIN
AT1G07705

Predicted

Synthetic Lethality

two hybrid

Affinity Capture-Western

Affinity Capture-Western

Synthetic Lethality

FSW = 0.1360

Unknown

 TRANSCRIPTION REGULATOR
AT1G10930

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.1313

Unknown

 RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G54370

Predicted

synthetic growth defect

FSW = 0.0678

Unknown

 NHX5 SODIUM ION TRANSMEMBRANE TRANSPORTER/ SODIUMHYDROGEN ANTIPORTER
AT1G59890

Predicted

Synthetic Lethality

FSW = 0.0901

Unknown

 SNL5 (SIN3-LIKE 5)
AT1G66740

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.2045

Unknown

 SGA2
AT1G67320

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0654

Unknown

 DNA PRIMASE LARGE SUBUNIT FAMILY
AT1G69680

Predicted

Synthetic Lethality

FSW = 0.0308

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MOG1/PSBP/DUF1795 ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016124) RAN-INTERACTING MOG1 PROTEIN (INTERPROIPR007681) MOG1/PSBP ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016123) HAS 202 BLAST HITS TO 202 PROTEINS IN 100 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 55 FUNGI - 83 PLANTS - 25 VIRUSES - 0 OTHER EUKARYOTES - 39 (SOURCE NCBI BLINK)
AT1G80410

Predicted

Synthetic Lethality

FSW = 0.1852

Unknown

 EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G02760

Predicted

Synthetic Lethality

FSW = 0.2215

Unknown

 ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G27600

Predicted

synthetic growth defect

FSW = 0.0366

Unknown

 SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G37550

Predicted

Synthetic Lethality

FSW = 0.0156

Unknown

 AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT2G44580

Predicted

synthetic growth defect

FSW = 0.2342

Unknown

 PROTEIN BINDING / ZINC ION BINDING
AT3G03420

Predicted

synthetic growth defect

FSW = 0.0513

Unknown

 KU70-BINDING FAMILY PROTEIN
AT3G12400

Predicted

synthetic growth defect

FSW = 0.1731

Unknown

 ELC UBIQUITIN BINDING
AT3G20800

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0839

Unknown

 RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE
AT3G42660

Predicted

synthetic growth defect

FSW = 0.2365

Unknown

 NUCLEOTIDE BINDING
AT3G45630

Predicted

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0978

Unknown

 RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G49470

Predicted

Affinity Capture-MS

FSW = 0.0280

Unknown

 NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)
AT3G58560

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

two hybrid

Affinity Capture-Western

two hybrid

two hybrid

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

Affinity Capture-Western

Affinity Capture-Western

two hybrid

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

two hybrid

interologs mapping

Co-purification

co-fractionation

Co-fractionation

FSW = 0.5669

Unknown

 ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT3G61710

Predicted

synthetic growth defect

FSW = 0.0342

Unknown

 AUTOPHAGY PROTEIN APG6 FAMILY
AT4G00660

Predicted

Affinity Capture-Western

interologs mapping

two hybrid

interologs mapping

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0950

Unknown

 DEAD/DEAH BOX HELICASE PUTATIVE
AT4G27040

Predicted

Synthetic Lethality

FSW = 0.1528

Unknown

 VPS22
AT4G27180

Predicted

Synthetic Lethality

FSW = 0.1132

Unknown

 ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT4G30870

Predicted

synthetic growth defect

FSW = 0.1458

Unknown

 MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT5G10270

Predicted

Synthetic Lethality

FSW = 0.1389

Unknown

 CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT1G22240

Predicted

Affinity Capture-Western

FSW = 0.0066

Unknown

 APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING
AT1G32750

Predicted

Synthetic Lethality

FSW = 0.0568

Unknown

 HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE
AT1G49760

Predicted

Synthetic Lethality

Synthetic Lethality

biochemical

FSW = 0.0244

Unknown

 PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G67190

Predicted

Synthetic Lethality

FSW = 0.2502

Unknown

 F-BOX FAMILY PROTEIN
AT3G24010

Predicted

synthetic growth defect

FSW = 0.0073

Unknown

 ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G53030

Predicted

Synthetic Lethality

FSW = 0.0036

Unknown

 SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT4G19003

Predicted

Affinity Capture-Western

FSW = 0.1050

Unknown

 VPS25
AT4G25120Predicted

synthetic growth defect

FSW = 0.1857

Unknown

 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT5G09740

Predicted

synthetic growth defect

FSW = 0.1709

Unknown

 HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G13780

Predicted

Synthetic Lethality

FSW = 0.2116

Unknown

 GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G26680

Predicted

synthetic growth defect

FSW = 0.2315

Unknown

 ENDONUCLEASE PUTATIVE
AT5G35980

Predicted

Affinity Capture-Western

biochemical

FSW = 0.0407

Unknown

 PROTEIN KINASE FAMILY PROTEIN
AT5G66610

Predicted

Affinity Capture-MS

FSW = 0.0041

Unknown

 DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING
AT5G22950

Predicted

synthetic growth defect

FSW = 0.0678

Unknown

 VPS241
AT5G27970Predicted

Synthetic Lethality

FSW = 0.1113

Unknown

 BINDING
AT5G41880

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1389

Unknown

 POLA3 DNA PRIMASE
AT5G43500

Predicted

synthetic growth defect

FSW = 0.1515

Unknown

 ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G45600

Predicted

synthetic growth defect

FSW = 0.1913

Unknown

 GAS41 PROTEIN BINDING
AT5G66100

Predicted

synthetic growth defect

FSW = 0.0730

Unknown

 LA DOMAIN-CONTAINING PROTEIN
AT5G67100

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1043

Unknown

 ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE
AT2G32070

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2816

Unknown

 CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G80780

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2074

Unknown

 CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G15920

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6000

Unknown

 CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT3G44240

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1100

Unknown

 CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G22250

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1481

Unknown

 CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT3G44260

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1110

Unknown

 CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G61470

Predicted

Phylogenetic profile method

FSW = 0.1110

Unknown

 CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE

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Fasta sequences:

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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