Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G37550 - ( AGD7 ARF GTPase activator/ DNA binding / zinc ion binding )
55 Proteins interacs with AT2G37550Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33120 | PredictedSynthetic Lethality | FSW = 0.0137
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT1G49240 | PredictedReconstituted Complex | FSW = 0.0379
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G12840 | PredictedSynthetic Lethality | FSW = 0.0277
| Unknown | DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G28715 | PredictedSynthetic Lethality | FSW = 0.0133
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT1G16920 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.1072
| Unknown | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING |
AT4G01320 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0142
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT5G55400 | Predictedsynthetic growth defect | FSW = 0.0305
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT2G30710 | PredictedSynthetic Lethality | FSW = 0.0225
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT2G29720 | Predictedtwo hybrid | FSW = 0.1017
| Unknown | CTF2B MONOOXYGENASE/ OXIDOREDUCTASE |
AT3G12110 | PredictedReconstituted Complex | FSW = 0.0227
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G59820 | PredictedSynthetic Lethality | FSW = 0.1380
| Unknown | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT1G07670 | PredictedSynthetic Lethality | FSW = 0.0572
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT4G34580 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Rescueinterologs mapping | FSW = 0.1289
| Unknown | COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT1G01630 | Predictedinterologs mapping | FSW = 0.0555
| Unknown | SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHOGLYCERIDE TRANSFER PROTEIN PUTATIVE |
AT1G19650 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Rescue | FSW = 0.0593
| Unknown | SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHOGLYCERIDE TRANSFER PROTEIN PUTATIVE |
AT4G18430 | Predictedinterologs mapping | FSW = 0.0656
| Unknown | ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING |
AT1G06400 | Predictedinterologs mapping | FSW = 0.0606
| Unknown | ARA-2 GTP BINDING |
AT3G08720 | Predictedtwo hybrid | FSW = 0.0254
| Unknown | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT3G24350 | PredictedCo-purification | FSW = 0.0304
| Unknown | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
AT2G04750 | Predictedsynthetic growth defect | FSW = 0.0305
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT3G05710 | PredictedSynthetic Lethality | FSW = 0.1217
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT3G25980 | PredictedSynthetic Lethality | FSW = 0.0042
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0121
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT5G54260 | PredictedSynthetic Lethality | FSW = 0.0409
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G17720 | Predictedinterologs mapping | FSW = 0.0055
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G20575 | Predictedtwo hybrid | FSW = 0.0431
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT1G79990 | PredictedPhenotypic Enhancement | FSW = 0.0435
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT2G02370 | Predictedtwo hybrid | FSW = 0.0678
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SNARE ASSOCIATED GOLGI PROTEIN (INTERPROIPR015414) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G124501) HAS 1745 BLAST HITS TO 1745 PROTEINS IN 446 SPECIES ARCHAE - 2 BACTERIA - 792 METAZOA - 108 FUNGI - 97 PLANTS - 119 VIRUSES - 0 OTHER EUKARYOTES - 627 (SOURCE NCBI BLINK) |
AT2G36300 | Predictedtwo hybrid | FSW = 0.0546
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.0162
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G05330 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.0321
| Unknown | AGD13 (ARF-GAP DOMAIN 13) ARF GTPASE ACTIVATOR/ ZINC ION BINDING |
AT4G17890 | Predictedinterologs mappingSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.0281
| Unknown | AGD8 (ARF-GAP DOMAIN 8) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT5G06140 | PredictedAffinity Capture-Western | FSW = 0.0210
| Unknown | SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING |
AT5G09350 | PredictedSynthetic Lethality | FSW = 0.1318
| Unknown | PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT5G10960 | PredictedSynthetic Lethality | FSW = 0.0156
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT3G05000 | PredictedSynthetic Lethality | FSW = 0.0976
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN |
AT3G12740 | PredictedSynthetic Lethality | FSW = 0.0781
| Unknown | ALIS1 (ALA-INTERACTING SUBUNIT 1) PHOSPHOLIPID TRANSPORTER |
AT3G16785 | Predictedinterologs mapping | FSW = 0.0604
| Unknown | PLDP1 (PHOSPHOLIPASE D P1) PHOSPHOLIPASE D |
AT4G09760 | Predictedinterologs mapping | FSW = 0.0863
| Unknown | CHOLINE KINASE PUTATIVE |
AT4G38570 | Predictedtwo hybrid | FSW = 0.0345
| Unknown | PIS2 (PROBABLE CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE 2) PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
AT5G61980 | Predictedinterologs mapping | FSW = 0.0444
| Unknown | AGD1 (ARF-GAP DOMAIN 1) ARF GTPASE ACTIVATOR/ PROTEIN BINDING / ZINC ION BINDING |
AT2G26830 | Predictedinterologs mapping | FSW = 0.0508
| Unknown | EMB1187 (EMBRYO DEFECTIVE 1187) KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT2G35210 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0235
| Unknown | RPA (ROOT AND POLLEN ARFGAP) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT1G52360 | Predictedinterologs mapping | FSW = 0.0384
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT1G70790 | PredictedSynthetic Lethalityinterologs mappingSynthetic Lethality | FSW = 0.0212
| Unknown | C2 DOMAIN-CONTAINING PROTEIN |
AT2G23420 | Predictedsynthetic growth defect | FSW = 0.0369
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT1G15920 | PredictedSynthetic Lethality | FSW = 0.0242
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT2G43650 | Predictedtwo hybrid | FSW = 0.0482
| Unknown | EMB2777 (EMBRYO DEFECTIVE 2777) |
AT1G80510 | Predictedtwo hybrid | FSW = 0.0059
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT2G39805 | Predictedtwo hybrid | FSW = 0.0634
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT2G18840 | Predictedtwo hybrid | FSW = 0.1161
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT1G12450 | Predictedtwo hybrid | FSW = 0.0345
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SNARE ASSOCIATED GOLGI PROTEIN (INTERPROIPR015414) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G228501) HAS 1233 BLAST HITS TO 1230 PROTEINS IN 347 SPECIES ARCHAE - 2 BACTERIA - 557 METAZOA - 104 FUNGI - 72 PLANTS - 132 VIRUSES - 0 OTHER EUKARYOTES - 366 (SOURCE NCBI BLINK) |
AT1G36980 | Predictedtwo hybrid | FSW = 0.0394
| Unknown | UNKNOWN PROTEIN |
AT1G68000 | Predictedtwo hybrid | FSW = 0.0872
| Unknown | ATPIS1 (PHOSPHATIDYLINOSITOL SYNTHASE 1) CDP-DIACYLGLYCEROL-INOSITOL 3-PHOSPHATIDYLTRANSFERASE |
AT2G28840 | PredictedGene fusion method | FSW = 0.0079
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454