Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G35210 - ( RPA (ROOT AND POLLEN ARFGAP) ARF GTPase activator/ DNA binding / zinc ion binding )
22 Proteins interacs with AT2G35210Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G10630 | Predictedbiochemical | FSW = 0.0965
| Unknown | ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP BINDING / COPPER ION BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT3G07680 | Predictedinterologs mapping | FSW = 0.0133
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G48890 | Predictedinterologs mapping | FSW = 0.0345
| Unknown | ATMP2 HEME BINDING |
AT1G18500 | PredictedAffinity Capture-MS | FSW = 0.0320
| Unknown | MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4) 2-ISOPROPYLMALATE SYNTHASE |
AT5G23630 | Predictedinterologs mapping | FSW = 0.0616
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G11890 | Predictedinterologs mapping | FSW = 0.1286
| Unknown | SEC22 TRANSPORTER |
AT1G62020 | PredictedAffinity Capture-MS | FSW = 0.1079
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE |
AT2G22290 | PredictedSynthetic Lethality | FSW = 0.0661
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT5G12940 | PredictedGene fusion method | FSW = 0.0640
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT2G30910 | PredictedSynthetic Lethality | FSW = 0.0765
| Unknown | ARPC1A (ACTIN-RELATED PROTEIN C1A) ACTIN BINDING / NUCLEOTIDE BINDING |
AT4G31480 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1505
| Unknown | COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE |
AT4G34450 | PredictedAffinity Capture-MSAffinity Capture-WesternSynthetic Lethality | FSW = 0.1256
| Unknown | COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE |
AT1G52360 | PredictedAffinity Capture-MS | FSW = 0.1914
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT2G37550 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0235
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT1G01910 | Predictedinterologs mapping | FSW = 0.1376
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT1G12340 | Predictedinterologs mapping | FSW = 0.1877
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT1G10870 | Predictedsynthetic growth defect | FSW = 0.0914
| Unknown | AGD4 (ARF-GAP DOMAIN 4) ARF GTPASE ACTIVATOR/ PROTEIN BINDING / ZINC ION BINDING |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0197
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0144
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT5G52210 | PredictedSynthetic Lethality | FSW = 0.0634
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT3G22590 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0416
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT5G15750 | Predictedtwo hybrid | FSW = 0.0145
| Unknown | RNA-BINDING S4 DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454