Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G30910 - ( ARPC1A (ACTIN-RELATED PROTEIN C1A) actin binding / nucleotide binding )
26 Proteins interacs with AT2G30910Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G19910 | PredictedSynthetic Lethality | FSW = 0.0400
| Unknown | AVA-P2 ATPASE/ PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT4G01320 | PredictedSynthetic Lethality | FSW = 0.1125
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT5G23630 | PredictedSynthetic Lethality | FSW = 0.0833
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G11890 | PredictedSynthetic Lethality | FSW = 0.0412
| Unknown | SEC22 TRANSPORTER |
AT1G69220 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0131
| Unknown | SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G04750 | PredictedSynthetic Lethality | FSW = 0.0590
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT2G31300 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.5177
| Unknown | ARPC1B (ACTIN-RELATED PROTEIN C1B) ACTIN BINDING / NUCLEOTIDE BINDING |
AT1G16190 | PredictedAffinity Capture-MS | FSW = 0.0411
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT3G28730 | PredictedAffinity Capture-MS | FSW = 0.0229
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0107
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT1G13180 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2162
| Unknown | DIS1 (DISTORTED TRICHOMES 1) ATP BINDING / ACTIN BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G60430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vitroin vitroin vivoAffinity Capture-MSSynthetic Lethality | FSW = 0.1925
| Unknown | ARPC3 (ACTIN-RELATED PROTEIN C3) STRUCTURAL MOLECULE |
AT3G27000 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vitroin vitroAffinity Capture-MSAffinity Capture-Western | FSW = 0.2119
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G33385 | Predictedin vitroin vitro | FSW = 0.1997
| Unknown | ARPC2B (ACTIN-RELATED PROTEIN C2B) STRUCTURAL MOLECULE |
AT1G30825 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1283
| Unknown | DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE |
AT3G22860 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | TIF3C2 TRANSLATION INITIATION FACTOR |
AT1G10090 | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | UNKNOWN PROTEIN |
AT2G21440 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G12040 | PredictedReconstituted Complextwo hybrid | FSW = 0.1250
| Unknown | LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CELL WALL |
AT1G32610 | PredictedReconstituted Complex | FSW = 0.1563
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT1G09000 | PredictedSynthetic Lethality | FSW = 0.1078
| Unknown | ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1) MAP KINASE KINASE KINASE/ KINASE |
AT1G29990 | PredictedSynthetic Lethality | FSW = 0.0651
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G08780 | PredictedSynthetic Lethality | FSW = 0.0756
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT3G22480 | PredictedSynthetic Lethality | FSW = 0.0693
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT5G26360 | PredictedSynthetic Lethality | FSW = 0.0665
| Unknown | CHAPERONIN PUTATIVE |
AT2G35210 | PredictedSynthetic Lethality | FSW = 0.0765
| Unknown | RPA (ROOT AND POLLEN ARFGAP) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454