Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G16190 - ( DNA repair protein RAD23 putative )
70 Proteins interacs with AT1G16190Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G22630 | PredictedAffinity Capture-Western | FSW = 0.2124
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G18070 | PredictedAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0360
| Unknown | EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE |
AT4G14800 | Predictedinteraction prediction | FSW = 0.1156
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G04840 | Predictedtwo hybrid | FSW = 0.0135
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AA) |
AT5G16630 | Predictedtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-purificationPhenotypic Suppressioninteraction prediction | FSW = 0.0559
| Unknown | RAD4 DAMAGED DNA BINDING |
AT4G35800 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0378
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G09840 | PredictedAffinity Capture-Western | FSW = 0.0269
| Unknown | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
AT1G45000 | PredictedAffinity Capture-MSAffinity Capture-WesternCo-purificationPhenotypic Enhancement | FSW = 0.3093
| Unknown | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT4G34670 | Predictedinteraction prediction | FSW = 0.0060
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
AT1G04810 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.3085
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT1G16890 | PredictedPhenotypic EnhancementEnriched domain pair | FSW = 0.0208
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT1G64230 | PredictedPhenotypic SuppressionSynthetic RescueEnriched domain pairCo-expression | FSW = 0.0514
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT1G20200 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2240
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT1G66410 | PredictedAffinity Capture-MS | FSW = 0.0066
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT1G53750 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternCo-purificationinteraction prediction | FSW = 0.2245
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G19990 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternCo-purificationPhenotypic Enhancementinteraction prediction | FSW = 0.2035
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT2G20140 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2836
| Unknown | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
AT2G20580 | Predictedtwo hybridReconstituted Complexinterologs mappingReconstituted ComplexAffinity Capture-WesternAffinity Capture-MStwo hybridinteraction prediction | FSW = 0.1589
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G09100 | PredictedAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.3031
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT5G41370 | Predictedinteraction prediction | FSW = 0.0286
| Unknown | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT3G05530 | Predictedinteraction prediction | FSW = 0.2240
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT3G13445 | Predictedinteraction prediction | FSW = 0.0318
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT4G17020 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0876
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT4G10670 | PredictedAffinity Capture-Western | FSW = 0.0514
| Unknown | GTC2 |
AT4G10710 | Predictedinteraction prediction | FSW = 0.0318
| Unknown | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT1G28060 | Predictedtwo hybrid | FSW = 0.0080
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
AT2G36170 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0086
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT1G05120 | PredictedPhenotypic Enhancement | FSW = 0.0099
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT1G55520 | PredictedAffinity Capture-Western | FSW = 0.0574
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT1G55750 | PredictedReconstituted Complexinteraction prediction | FSW = 0.0307
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT5G41360 | PredictedReconstituted Complex | FSW = 0.0866
| Unknown | XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT2G04750 | PredictedAffinity Capture-MS | FSW = 0.0365
| Unknown | FIMBRIN-LIKE PROTEIN PUTATIVE |
AT4G33720 | Predictedtwo hybrid | FSW = 0.0045
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G79650 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1039
| Unknown | RAD23 DAMAGED DNA BINDING |
AT3G25980 | PredictedSynthetic Lethality | FSW = 0.0213
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G30910 | PredictedAffinity Capture-MS | FSW = 0.0411
| Unknown | ARPC1A (ACTIN-RELATED PROTEIN C1A) ACTIN BINDING / NUCLEOTIDE BINDING |
AT5G58290 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2475
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G20850 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT3G02540 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0948
| Unknown | RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) DAMAGED DNA BINDING |
AT4G38630 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic EnhancementPhenotypic EnhancementAffinity Capture-MSSynthetic LethalityAffinity Capture-MSPhenotypic Enhancementsynthetic growth defectinteraction prediction | FSW = 0.1942
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT1G78770 | PredictedAffinity Capture-Western | FSW = 0.0102
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G17190 | Predictedinteraction predictiontwo hybridsynthetic growth defectsynthetic growth defectPhenotypic Enhancementtwo hybridPhenotypic Enhancementsynthetic growth defect | FSW = 0.2263
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT3G52590 | Predictedtwo hybrid | FSW = 0.0167
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G62250 | Predictedtwo hybrid | FSW = 0.0139
| Unknown | UBQ5 (UBIQUITIN 5) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G15910 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT3G27000 | PredictedAffinity Capture-MS | FSW = 0.0349
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G15400 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexSynthetic Rescuetwo hybridinteraction prediction | FSW = 0.1013
| Unknown | U-BOX DOMAIN-CONTAINING PROTEIN |
AT1G64750 | PredictedAffinity Capture-MS | FSW = 0.2591
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT4G19006 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.2923
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G23540 | PredictedAffinity Capture-MS | FSW = 0.2367
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT1G13180 | PredictedAffinity Capture-MS | FSW = 0.0407
| Unknown | DIS1 (DISTORTED TRICHOMES 1) ATP BINDING / ACTIN BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G01750 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) ACTIN BINDING |
AT5G49570 | PredictedAffinity Capture-WesternAffinity Capture-MSCo-crystal StructureReconstituted Complextwo hybridinteraction prediction | FSW = 0.0285
| Unknown | ATPNG1 (ARABIDOPSIS THALIANA PEPTIDE-N-GLYCANASE 1) CATALYTIC/ PEPTIDE-N4-(N-ACETYL-BETA-GLUCOSAMINYL)ASPARAGINE AMIDASE |
AT1G64520 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2310
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT1G29150 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1908
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT3G11270 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2397
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT3G27430 | PredictedAffinity Capture-Western | FSW = 0.0356
| Unknown | PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G15475 | PredictedAffinity Capture-Western | FSW = 0.0772
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT4G05320 | PredictedAffinity Capture-Westerntwo hybridinteraction prediction | FSW = 0.0440
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT3G13235 | Predictedtwo hybridAffinity Capture-Westernco-fractionationCo-fractionationtwo hybridinteraction prediction | FSW = 0.0693
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT1G14400 | PredictedPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defectEnriched domain pairCo-expression | FSW = 0.0928
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT3G57870 | PredictedPhenotypic EnhancementEnriched domain pairCo-expression | FSW = 0.0112
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.0233
| Unknown | ENDONUCLEASE PUTATIVE |
AT3G42660 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0460
| Unknown | NUCLEOTIDE BINDING |
AT2G44580 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0451
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G04730 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0506
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT5G16870 | Predictedtwo hybrid | FSW = 0.0548
| Unknown | AMINOACYL-TRNA HYDROLASE |
AT1G56440 | Predictedtwo hybrid | FSW = 0.0285
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE-RELATED |
AT3G24210 | Predictedtwo hybrid | FSW = 0.0132
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT5G40580 | Predictedinteraction prediction | FSW = 0.0294
| Unknown | PBB2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454