Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G55750 - ( transcription factor-related )
54 Proteins interacs with AT1G55750Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G04990![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0088
| Class C:nucleus | SAD1/UNC-84 PROTEIN-RELATED |
AT4G17020![]() ![]() ![]() ![]() | PredictedCo-purificationAffinity Capture-MS | FSW = 0.2922
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT3G12480![]() ![]() ![]() ![]() | PredictedSynthetic Rescue | FSW = 0.0155
| Class C:nucleus | NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G18040![]() ![]() ![]() ![]() | PredictedCo-purification | FSW = 0.0779
| Class C:nucleus | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT1G03190![]() ![]() ![]() ![]() | Predictedtwo hybridtwo hybridin vivoin vivoin vitroin vitroCo-purificationCo-purificationCo-purificationCo-purificationCo-purificationCo-purificationCo-purificationAffinity Capture-MS | FSW = 0.1668
| Class C:nucleus | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT5G41360![]() ![]() ![]() ![]() | Predictedin vivoin vivoin vivoin vivoin vitroin vitroin vitroin vitroCo-purification | FSW = 0.3156
| Class C:nucleus | XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT1G21700![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0170
| Class C:nucleus | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT4G20340![]() ![]() ![]() ![]() | Predictedin vitro | FSW = 0.1073
| Class C:nucleus | RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G03280![]() ![]() ![]() ![]() | Predictedinteraction predictiontwo hybridAffinity Capture-MSAffinity Capture-MSinterologs mappingin vitro | FSW = 0.0811
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN |
AT1G44900![]() ![]() ![]() ![]() | Predictedin vitro | FSW = 0.0217
| Class C:nucleus | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT1G18340![]() ![]() ![]() ![]() | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2222
| Class C:nucleus | BASAL TRANSCRIPTION FACTOR COMPLEX SUBUNIT-RELATED |
AT1G05055![]() ![]() ![]() ![]() | PredictedReconstituted ComplexCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3088
| Class C:nucleus | GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G43700![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0140
| Class C:nucleus | VIP1 (VIRE2-INTERACTING PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT4G19640![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0351
| Unknown | ARA7 GTP BINDING |
AT3G22110![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0261
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G13710![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0386
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT3G48890![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0172
| Unknown | ATMP2 HEME BINDING |
AT2G28190![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0439
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT3G10050![]() ![]() ![]() ![]() | Predictedinteraction predictiontwo hybrid | FSW = 0.0070
| Unknown | OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE |
AT4G35800![]() ![]() ![]() ![]() | Predictedin vitroin vivo | FSW = 0.0629
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G23630![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0298
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G53750![]() ![]() ![]() ![]() | Predictedin vivoin vitro | FSW = 0.0174
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT3G53110![]() ![]() ![]() ![]() | PredictedAffinity Capture-Western | FSW = 0.0638
| Unknown | LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE |
AT1G22660![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0776
| Unknown | TRNA-NUCLEOTIDYLTRANSFERASE PUTATIVE / TRNA ADENYLYLTRANSFERASE PUTATIVE |
AT3G54840![]() ![]() ![]() ![]() | Predictedinteraction prediction | FSW = 0.0063
| Unknown | ARA6 GTP BINDING / GTPASE |
AT1G16190![]() ![]() ![]() ![]() | PredictedReconstituted Complexinteraction prediction | FSW = 0.0307
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G38470![]() ![]() ![]() ![]() | PredictedReconstituted Complex | FSW = 0.0172
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT3G28030![]() ![]() ![]() ![]() | PredictedReconstituted ComplexCo-purificationinteraction prediction | FSW = 0.0450
| Unknown | UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING |
AT5G42000![]() ![]() ![]() ![]() | Predictedtwo hybridtwo hybrid | FSW = 0.0779
| Unknown | ORMDL FAMILY PROTEIN |
AT2G25970![]() ![]() ![]() ![]() | Predictedin vivoin vitro | FSW = 0.0577
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
AT5G27620![]() ![]() ![]() ![]() | Predictedin vitroCo-purificationAffinity Capture-MS | FSW = 0.1116
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G20610![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0429
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G09020![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0162
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT1G15780![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.1102
| Unknown | UNKNOWN PROTEIN |
AT1G79890![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0141
| Unknown | HELICASE-RELATED |
AT2G20000![]() ![]() ![]() ![]() | PredictedAffinity Capture-MS | FSW = 0.0429
| Unknown | HBT (HOBBIT) BINDING |
AT2G44150![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0418
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G18860![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0172
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G25230![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0209
| Unknown | ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G56640![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0036
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT4G15770![]() ![]() ![]() ![]() | PredictedSynthetic Lethality | FSW = 0.0132
| Unknown | RNA BINDING / PROTEIN BINDING |
AT5G27970 | PredictedPhenotypic Enhancement | FSW = 0.0425
| Unknown | BINDING |
AT5G50320![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0216
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT5G61150![]() ![]() ![]() ![]() | PredictedPhenotypic Enhancement | FSW = 0.0437
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT1G15810![]() ![]() ![]() ![]() | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0175
| Unknown | RIBOSOMAL PROTEIN S15 FAMILY PROTEIN |
AT4G20330![]() ![]() ![]() ![]() | Predictedin vitro | FSW = 0.0811
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT1G12400![]() ![]() ![]() ![]() | Predictedin vitro | FSW = 0.2411
| Unknown | DNA BINDING |
AT2G18840![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0175
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT5G04710![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0166
| Unknown | ASPARTYL AMINOPEPTIDASE PUTATIVE |
AT3G54630![]() ![]() ![]() ![]() | Predictedtwo hybridinteraction prediction | FSW = 0.0135
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 11 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NDC80 (INTERPROIPR005550) HAS 19800 BLAST HITS TO 12108 PROTEINS IN 845 SPECIES ARCHAE - 345 BACTERIA - 1709 METAZOA - 11031 FUNGI - 1499 PLANTS - 797 VIRUSES - 39 OTHER EUKARYOTES - 4380 (SOURCE NCBI BLINK) |
AT3G24090![]() ![]() ![]() ![]() | Predictedinteraction predictiontwo hybrid | FSW = 0.0167
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT1G02170![]() ![]() ![]() ![]() | Predictedtwo hybridinteraction prediction | FSW = 0.0312
| Unknown | AMC1 (METACASPASE 1) CYSTEINE-TYPE ENDOPEPTIDASE |
AT1G20575![]() ![]() ![]() ![]() | Predictedinteraction predictiontwo hybrid | FSW = 0.0172
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT4G38900![]() ![]() ![]() ![]() | Predictedinteraction prediction | FSW = 0.0180
| Unknown | BZIP PROTEIN |
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Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454