Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G18040 - ( CDKD13 (CYCLIN-DEPENDENT KINASE D13) kinase/ protein kinase )

68 Proteins interacs with AT1G18040
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G48750

Experimental

protein complementation assay

FSW = 0.1747

Class A:

nucleus

Class B:

plasma membrane

cytosol

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT1G47210

Experimental

protein complementation assay

FSW = 0.0914

Class A:

nucleus

Class B:

cytosol

Class D:

mitochondrion (p = 0.82)

CYCLIN FAMILY PROTEIN
AT5G48820

Experimental

protein complementation assay

FSW = 0.3012

Class A:

nucleus

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR
AT2G32710

Experimental

protein complementation assay

FSW = 0.3103

Class A:

nucleus

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

KRP4 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR
AT3G24810

Experimental

protein complementation assay

FSW = 0.2634

Class A:

nucleus

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

ICK3 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR
AT2G36010

Experimental

protein complementation assay

FSW = 0.0356

Class A:

nucleus

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR
AT2G23430

Experimental

protein complementation assay

FSW = 0.2922

Class A:

nucleus

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

ICK1 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR
AT3G19150

Experimental

protein complementation assay

FSW = 0.2092

Class A:

nucleus

Class D:

mitochondrion (p = 0.82)

KRP6 (KIP-RELATED PROTEIN 6) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR
AT3G50630

Experimental

protein complementation assay

FSW = 0.2294

Class A:

nucleus

KRP2 (KIP-RELATED PROTEIN 2) CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR/ KINASE INHIBITOR/ PROTEIN BINDING
AT1G49620

Experimental

protein complementation assay

FSW = 0.2294

Class A:

nucleus

ICK5 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR
AT5G27620

Experimental

two hybrid

protein complementation assay

FSW = 0.3128

Unknown

CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT4G28980

Experimental

co-fractionation

Co-fractionation

protein complementation assay

FSW = 0.2551

Unknown

CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE 1AT / CDK-ACTIVATING KINASE 1AT (CAK1)
AT3G54180

Experimental

protein complementation assay

FSW = 0.2660

Unknown

CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING
AT2G38620

Experimental

protein complementation assay

FSW = 0.4673

Unknown

CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G27960

Experimental

protein complementation assay

FSW = 0.1862

Unknown

CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING
AT2G27970

Experimental

protein complementation assay

FSW = 0.1750

Unknown

CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G44110

Experimental

protein complementation assay

FSW = 0.0901

Unknown

CYCA11 (CYCLIN A11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G25380

Experimental

protein complementation assay

FSW = 0.2086

Unknown

CYCA21 (CYCLIN A21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G11300

Experimental

protein complementation assay

FSW = 0.0537

Unknown

CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G15570

Experimental

protein complementation assay

FSW = 0.1662

Unknown

CYCA23 (CYCLIN A23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G80370

Experimental

protein complementation assay

FSW = 0.1432

Unknown

CYCA24 (CYCLIN A24) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G43080

Experimental

protein complementation assay

FSW = 0.1875

Unknown

CYCA31 (CYCLIN A31) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G47230

Experimental

protein complementation assay

FSW = 0.2280

Unknown

CYCLIN PUTATIVE
AT3G11520

Experimental

protein complementation assay

FSW = 0.0556

Unknown

CYCB13 (CYCLIN B13) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G20610

Experimental

protein complementation assay

FSW = 0.0716

Unknown

CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G65420

Experimental

protein complementation assay

FSW = 0.3200

Unknown

CYCD41 (CYCLIN D41) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT4G37630

Experimental

protein complementation assay

FSW = 0.4000

Unknown

CYCD51 (CYCLIN D51) CYCLIN-DEPENDENT PROTEIN KINASE
AT4G03270

Experimental

protein complementation assay

FSW = 0.3543

Unknown

CYCD61 (CYCLIN D61) CYCLIN-DEPENDENT PROTEIN KINASE
AT5G41370

Predicted

Phenotypic Enhancement

FSW = 0.0993

Class C:

nucleus

XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING
AT1G66750

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4518

Class C:

nucleus

CAK4 (CDK-ACTIVATING KINASE 4) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE
AT3G55770

Predicted

two hybrid

two hybrid

FSW = 0.0227

Class C:

nucleus

LIM DOMAIN-CONTAINING PROTEIN
AT1G03190

Predicted

Synthetic Lethality

Co-purification

Co-purification

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0555

Class C:

nucleus

UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT1G55750

Predicted

Co-purification

FSW = 0.0779

Class C:

nucleus

TRANSCRIPTION FACTOR-RELATED
AT1G18340

Predicted

Affinity Capture-MS

FSW = 0.1582

Class C:

nucleus

BASAL TRANSCRIPTION FACTOR COMPLEX SUBUNIT-RELATED
AT4G02060

Predicted

in vivo

FSW = 0.0219

Class C:

nucleus

PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G05055

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1315

Class C:

nucleus

GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT4G08350

Predicted

synthetic growth defect

FSW = 0.0332

Class C:

nucleus

GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT2G34210

Predicted

synthetic growth defect

FSW = 0.0326

Class C:

nucleus

STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT5G15550

Predicted

biochemical

FSW = 0.0030

Class C:

nucleus

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G41360

Predicted

Phenotypic Enhancement

Co-purification

FSW = 0.1582

Class C:

nucleus

XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING
AT3G12580

Predicted

two hybrid

two hybrid

FSW = 0.0064

Unknown

HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT4G01370

Predicted

Phylogenetic profile method

FSW = 0.0635

Unknown

ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT1G73820

Predicted

Synthetic Lethality

Affinity Capture-Western

Co-expression

FSW = 0.0506

Unknown

SSU72-LIKE FAMILY PROTEIN
AT1G31160

Predicted

Affinity Capture-Western

interologs mapping

Phenotypic Enhancement

Synthetic Lethality

two hybrid

FSW = 0.0134

Unknown

ZINC-BINDING PROTEIN PUTATIVE / PROTEIN KINASE C INHIBITOR PUTATIVE
AT4G35800

Predicted

biochemical

biochemical

biochemical

biochemical

biochemical

biochemical

far western blotting

interologs mapping

interaction prediction

FSW = 0.0748

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G18040

Predicted

Synthetic Rescue

FSW = 0.0649

Unknown

PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT1G62740

Predicted

Synthetic Lethality

FSW = 0.0356

Unknown

STRESS-INDUCIBLE PROTEIN PUTATIVE
AT5G48545

Predicted

interologs mapping

Synthetic Lethality

Affinity Capture-Western

two hybrid

Phenotypic Enhancement

FSW = 0.0141

Unknown

HISTIDINE TRIAD FAMILY PROTEIN / HIT FAMILY PROTEIN
AT4G21710

Predicted

far western blotting

interologs mapping

interaction prediction

FSW = 0.0765

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G25520

Predicted

two hybrid

FSW = 0.0102

Unknown

TRANSCRIPTION ELONGATION FACTOR-RELATED
AT1G12400

Predicted

in vitro

Affinity Capture-Western

FSW = 0.2301

Unknown

DNA BINDING
AT1G61040

Predicted

Synthetic Lethality

FSW = 0.0447

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G52740

Predicted

biochemical

FSW = 0.0170

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT2G43790

Predicted

Affinity Capture-Western

Phylogenetic profile method

Co-expression

FSW = 0.1038

Unknown

ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE
AT3G09100

Predicted

Synthetic Lethality

FSW = 0.0737

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT5G60340Predicted

biochemical

FSW = 0.0052

Unknown

MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN
AT5G63670

Predicted

synthetic growth defect

FSW = 0.0900

Unknown

SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT5G08565

Predicted

synthetic growth defect

FSW = 0.0652

Unknown

POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT1G12270

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0250

Unknown

STRESS-INDUCIBLE PROTEIN PUTATIVE
AT2G18170

Predicted

Phylogenetic profile method

FSW = 0.1681

Unknown

ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) MAP KINASE/ KINASE
AT2G46070

Predicted

Phylogenetic profile method

FSW = 0.0688

Unknown

MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE
AT3G45640

Predicted

Phylogenetic profile method

FSW = 0.1592

Unknown

ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT1G59580

Predicted

Phylogenetic profile method

FSW = 0.0611

Unknown

ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE
AT4G36450

Predicted

Phylogenetic profile method

FSW = 0.2017

Unknown

ATMPK14 (MITOGEN-ACTIVATED PROTEIN KINASE 14) MAP KINASE/ KINASE
AT1G10210

Predicted

Phylogenetic profile method

FSW = 0.0406

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT3G59790

Predicted

Phylogenetic profile method

FSW = 0.0945

Unknown

ATMPK10 MAP KINASE/ KINASE
AT1G07880

Predicted

Phylogenetic profile method

FSW = 0.0890

Unknown

ATMPK13 MAP KINASE/ KINASE
AT4G28380

Predicted

Gene fusion method

FSW = 0.0322

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454