Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G18040 - ( CDKD13 (CYCLIN-DEPENDENT KINASE D13) kinase/ protein kinase )
68 Proteins interacs with AT1G18040Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750 | Experimentalprotein complementation assay | FSW = 0.1747
| Class A:nucleusClass B:plasma membranecytosol | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G47210 | Experimentalprotein complementation assay | FSW = 0.0914
| Class A:nucleusClass B:cytosolClass D:mitochondrion (p = 0.82) | CYCLIN FAMILY PROTEIN |
AT5G48820 | Experimentalprotein complementation assay | FSW = 0.3012
| Class A:nucleusClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT2G32710 | Experimentalprotein complementation assay | FSW = 0.3103
| Class A:nucleusClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | KRP4 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT3G24810 | Experimentalprotein complementation assay | FSW = 0.2634
| Class A:nucleusClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | ICK3 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT2G36010 | Experimentalprotein complementation assay | FSW = 0.0356
| Class A:nucleusClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G23430 | Experimentalprotein complementation assay | FSW = 0.2922
| Class A:nucleusClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | ICK1 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT3G19150 | Experimentalprotein complementation assay | FSW = 0.2092
| Class A:nucleusClass D:mitochondrion (p = 0.82) | KRP6 (KIP-RELATED PROTEIN 6) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT3G50630 | Experimentalprotein complementation assay | FSW = 0.2294
| Class A:nucleus | KRP2 (KIP-RELATED PROTEIN 2) CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR/ KINASE INHIBITOR/ PROTEIN BINDING |
AT1G49620 | Experimentalprotein complementation assay | FSW = 0.2294
| Class A:nucleus | ICK5 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT5G27620 | Experimentaltwo hybridprotein complementation assay | FSW = 0.3128
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT4G28980 | Experimentalco-fractionationCo-fractionationprotein complementation assay | FSW = 0.2551
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE 1AT / CDK-ACTIVATING KINASE 1AT (CAK1) |
AT3G54180 | Experimentalprotein complementation assay | FSW = 0.2660
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT2G38620 | Experimentalprotein complementation assay | FSW = 0.4673
| Unknown | CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G27960 | Experimentalprotein complementation assay | FSW = 0.1862
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT2G27970 | Experimentalprotein complementation assay | FSW = 0.1750
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G44110 | Experimentalprotein complementation assay | FSW = 0.0901
| Unknown | CYCA11 (CYCLIN A11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G25380 | Experimentalprotein complementation assay | FSW = 0.2086
| Unknown | CYCA21 (CYCLIN A21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G11300 | Experimentalprotein complementation assay | FSW = 0.0537
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G15570 | Experimentalprotein complementation assay | FSW = 0.1662
| Unknown | CYCA23 (CYCLIN A23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G80370 | Experimentalprotein complementation assay | FSW = 0.1432
| Unknown | CYCA24 (CYCLIN A24) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G43080 | Experimentalprotein complementation assay | FSW = 0.1875
| Unknown | CYCA31 (CYCLIN A31) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G47230 | Experimentalprotein complementation assay | FSW = 0.2280
| Unknown | CYCLIN PUTATIVE |
AT3G11520 | Experimentalprotein complementation assay | FSW = 0.0556
| Unknown | CYCB13 (CYCLIN B13) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G20610 | Experimentalprotein complementation assay | FSW = 0.0716
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G65420 | Experimentalprotein complementation assay | FSW = 0.3200
| Unknown | CYCD41 (CYCLIN D41) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G37630 | Experimentalprotein complementation assay | FSW = 0.4000
| Unknown | CYCD51 (CYCLIN D51) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G03270 | Experimentalprotein complementation assay | FSW = 0.3543
| Unknown | CYCD61 (CYCLIN D61) CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G41370 | PredictedPhenotypic Enhancement | FSW = 0.0993
| Class C:nucleus | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT1G66750 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4518
| Class C:nucleus | CAK4 (CDK-ACTIVATING KINASE 4) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT3G55770 | Predictedtwo hybridtwo hybrid | FSW = 0.0227
| Class C:nucleus | LIM DOMAIN-CONTAINING PROTEIN |
AT1G03190 | PredictedSynthetic LethalityCo-purificationCo-purificationAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0555
| Class C:nucleus | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT1G55750 | PredictedCo-purification | FSW = 0.0779
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT1G18340 | PredictedAffinity Capture-MS | FSW = 0.1582
| Class C:nucleus | BASAL TRANSCRIPTION FACTOR COMPLEX SUBUNIT-RELATED |
AT4G02060 | Predictedin vivo | FSW = 0.0219
| Class C:nucleus | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G05055 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1315
| Class C:nucleus | GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT4G08350 | Predictedsynthetic growth defect | FSW = 0.0332
| Class C:nucleus | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | Predictedsynthetic growth defect | FSW = 0.0326
| Class C:nucleus | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT5G15550 | Predictedbiochemical | FSW = 0.0030
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G41360 | PredictedPhenotypic EnhancementCo-purification | FSW = 0.1582
| Class C:nucleus | XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT3G12580 | Predictedtwo hybridtwo hybrid | FSW = 0.0064
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT4G01370 | PredictedPhylogenetic profile method | FSW = 0.0635
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT1G73820 | PredictedSynthetic LethalityAffinity Capture-WesternCo-expression | FSW = 0.0506
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT1G31160 | PredictedAffinity Capture-Westerninterologs mappingPhenotypic EnhancementSynthetic Lethalitytwo hybrid | FSW = 0.0134
| Unknown | ZINC-BINDING PROTEIN PUTATIVE / PROTEIN KINASE C INHIBITOR PUTATIVE |
AT4G35800 | Predictedbiochemicalbiochemicalbiochemicalbiochemicalbiochemicalbiochemicalfar western blottinginterologs mappinginteraction prediction | FSW = 0.0748
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G18040 | PredictedSynthetic Rescue | FSW = 0.0649
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT1G62740 | PredictedSynthetic Lethality | FSW = 0.0356
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT5G48545 | Predictedinterologs mappingSynthetic LethalityAffinity Capture-Westerntwo hybridPhenotypic Enhancement | FSW = 0.0141
| Unknown | HISTIDINE TRIAD FAMILY PROTEIN / HIT FAMILY PROTEIN |
AT4G21710 | Predictedfar western blottinginterologs mappinginteraction prediction | FSW = 0.0765
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G25520 | Predictedtwo hybrid | FSW = 0.0102
| Unknown | TRANSCRIPTION ELONGATION FACTOR-RELATED |
AT1G12400 | Predictedin vitroAffinity Capture-Western | FSW = 0.2301
| Unknown | DNA BINDING |
AT1G61040 | PredictedSynthetic Lethality | FSW = 0.0447
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G52740 | Predictedbiochemical | FSW = 0.0170
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT2G43790 | PredictedAffinity Capture-WesternPhylogenetic profile methodCo-expression | FSW = 0.1038
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT3G09100 | PredictedSynthetic Lethality | FSW = 0.0737
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT5G60340 | Predictedbiochemical | FSW = 0.0052
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
AT5G63670 | Predictedsynthetic growth defect | FSW = 0.0900
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT5G08565 | Predictedsynthetic growth defect | FSW = 0.0652
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT1G12270 | PredictedSynthetic LethalityCo-expression | FSW = 0.0250
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT2G18170 | PredictedPhylogenetic profile method | FSW = 0.1681
| Unknown | ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) MAP KINASE/ KINASE |
AT2G46070 | PredictedPhylogenetic profile method | FSW = 0.0688
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT3G45640 | PredictedPhylogenetic profile method | FSW = 0.1592
| Unknown | ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G59580 | PredictedPhylogenetic profile method | FSW = 0.0611
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT4G36450 | PredictedPhylogenetic profile method | FSW = 0.2017
| Unknown | ATMPK14 (MITOGEN-ACTIVATED PROTEIN KINASE 14) MAP KINASE/ KINASE |
AT1G10210 | PredictedPhylogenetic profile method | FSW = 0.0406
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT3G59790 | PredictedPhylogenetic profile method | FSW = 0.0945
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT1G07880 | PredictedPhylogenetic profile method | FSW = 0.0890
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT4G28380 | PredictedGene fusion method | FSW = 0.0322
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454