Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G38620 - ( CDKB12 (cyclin-dependent kinase B12) cyclin binding / kinase/ protein serine/threonine kinase )

37 Proteins interacs with AT2G38620
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G48750

Experimental

protein complementation assay

FSW = 0.2602

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT1G66750

Experimental

protein complementation assay

FSW = 0.7010

Unknown

CAK4 (CDK-ACTIVATING KINASE 4) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE
AT5G48820

Experimental

protein complementation assay

FSW = 0.5510

Unknown

ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR
AT2G32710

Experimental

protein complementation assay

FSW = 0.4821

Unknown

KRP4 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR
AT3G24810

Experimental

protein complementation assay

FSW = 0.4734

Unknown

ICK3 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR
AT2G36010

Experimental

protein complementation assay

FSW = 0.0612

Unknown

E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR
AT2G23430

Experimental

protein complementation assay

FSW = 0.5278

Unknown

ICK1 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR
AT1G18040

Experimental

protein complementation assay

FSW = 0.4673

Unknown

CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE
AT3G19150

Experimental

protein complementation assay

FSW = 0.4990

Unknown

KRP6 (KIP-RELATED PROTEIN 6) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR
AT3G50630

Experimental

protein complementation assay

FSW = 0.4994

Unknown

KRP2 (KIP-RELATED PROTEIN 2) CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR/ KINASE INHIBITOR/ PROTEIN BINDING
AT1G49620

Experimental

protein complementation assay

FSW = 0.4994

Unknown

ICK5 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR
AT2G27960

Experimental

protein complementation assay

two hybrid

FSW = 0.3841

Unknown

CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING
AT3G54180

Experimental

protein complementation assay

FSW = 0.5469

Unknown

CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING
AT1G76540

Experimental

protein complementation assay

FSW = 0.7424

Unknown

CDKB21 (CYCLIN-DEPENDENT KINASE B21) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING
AT5G63610

Experimental

protein complementation assay

FSW = 0.1896

Unknown

CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G28980

Experimental

protein complementation assay

FSW = 0.5143

Unknown

CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE 1AT / CDK-ACTIVATING KINASE 1AT (CAK1)
AT2G27970

Experimental

protein complementation assay

two hybrid

FSW = 0.3231

Unknown

CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G25380

Experimental

protein complementation assay

two hybrid

FSW = 0.3406

Unknown

CYCA21 (CYCLIN A21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G11300

Experimental

protein complementation assay

two hybrid

FSW = 0.1900

Unknown

CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G15570

Experimental

protein complementation assay

two hybrid

FSW = 0.3788

Unknown

CYCA23 (CYCLIN A23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G80370

Experimental

protein complementation assay

FSW = 0.3186

Unknown

CYCA24 (CYCLIN A24) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G43080

Experimental

protein complementation assay

FSW = 0.3528

Unknown

CYCA31 (CYCLIN A31) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G47230

Experimental

protein complementation assay

FSW = 0.4289

Unknown

CYCLIN PUTATIVE
AT4G37490

Experimental

protein complementation assay

FSW = 0.1405

Unknown

CYCB11 (CYCLIN B11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G06150

Experimental

protein complementation assay

FSW = 0.0661

Unknown

CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G20610

Experimental

protein complementation assay

FSW = 0.0976

Unknown

CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G16330

Experimental

protein complementation assay

FSW = 0.1739

Unknown

CYCB31 (CYCLIN B31) CYCLIN-DEPENDENT PROTEIN KINASE
AT5G65420

Experimental

protein complementation assay

two hybrid

FSW = 0.6130

Unknown

CYCD41 (CYCLIN D41) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G10440

Experimental

protein complementation assay

FSW = 0.5681

Unknown

CYCD42 (CYCLIN D42) CYCLIN-DEPENDENT PROTEIN KINASE
AT4G37630

Experimental

protein complementation assay

FSW = 0.6802

Unknown

CYCD51 (CYCLIN D51) CYCLIN-DEPENDENT PROTEIN KINASE
AT4G03270

Experimental

protein complementation assay

FSW = 0.6005

Unknown

CYCD61 (CYCLIN D61) CYCLIN-DEPENDENT PROTEIN KINASE
AT5G27620

Experimental

protein complementation assay

FSW = 0.3245

Unknown

CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT1G01560

Predicted

Phylogenetic profile method

FSW = 0.0256

Unknown

ATMPK11 MAP KINASE/ KINASE
AT1G20930

Predicted

Phylogenetic profile method

FSW = 0.4671

Unknown

CDKB22 (CYCLIN-DEPENDENT KINASE B22) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE
AT2G23080

Predicted

Phylogenetic profile method

FSW = 0.0169

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G63630

Predicted

Gene fusion method

FSW = 0.0245

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT5G08160

Predicted

Gene fusion method

FSW = 0.0143

Unknown

ATPK3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454