Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G23430 - ( ICK1 cyclin-dependent protein kinase inhibitor )
28 Proteins interacs with AT2G23430Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750 | Experimentaltwo hybridtwo hybridpull downReconstituted Complexfluorescence acceptor donor pairprotein complementation assayin vitroin vitrotwo hybrid | FSW = 0.1974
| Class A:nucleusClass B:plasma membranecytosolClass D:cytosol (p = 0.67) | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G66750 | Experimentalprotein complementation assay | FSW = 0.4654
| Class A:nucleusClass B:cytosolClass D:mitochondrion (p = 0.82)cytosol (p = 0.67) | CAK4 (CDK-ACTIVATING KINASE 4) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT1G47210 | Experimentalprotein complementation assay | FSW = 0.1471
| Class A:nucleusClass B:cytosolClass D:mitochondrion (p = 0.82)cytosol (p = 0.67) | CYCLIN FAMILY PROTEIN |
AT5G14960 | Experimentaltwo hybrid | FSW = 0.1763
| Class A:nucleusClass D:plastid (p = 0.78)mitochondrion (p = 0.82)cytosol (p = 0.67) | DEL2 (DP-E2F-LIKE 2) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G18040 | Experimentalprotein complementation assay | FSW = 0.2922
| Class A:nucleusClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT3G48160 | Experimentaltwo hybrid | FSW = 0.3630
| Class A:nucleusClass D:plastid (p = 0.78) | DEL1 (DP-E2F-LIKE 1) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G17020 | Experimental | FSW = 0.0156
| Class A:nucleusClass D:cytosol (p = 0.67) | XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR |
AT4G34160 | Experimentaltwo hybridReconstituted Complextwo hybridprotein complementation assayin vitroin vitrotwo hybrid | FSW = 0.2165
| Class A:nucleus | CYCD31 (CYCLIN D31) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR/ PROTEIN BINDING |
AT1G70210 | Experimental | FSW = 0.1021
| Unknown | CYCD11 (CYCLIN D11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G22490 | Experimentalprotein complementation assay | FSW = 0.2367
| Unknown | CYCD21 (CYCLIN D21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR/ PROTEIN BINDING |
AT2G22010 | ExperimentalReconstituted Complexin vitro | FSW = 0.0573
| Unknown | RKP (RELATED TO KPC1) PROTEIN BINDING / ZINC ION BINDING |
AT2G27970 | Experimentalfluorescence acceptor donor pairprotein complementation assay | FSW = 0.2735
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G80370 | Experimentalfluorescence acceptor donor pairprotein complementation assay | FSW = 0.2016
| Unknown | CYCA24 (CYCLIN A24) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G38620 | Experimentalprotein complementation assay | FSW = 0.5278
| Unknown | CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G76540 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.6545
| Unknown | CDKB21 (CYCLIN-DEPENDENT KINASE B21) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT2G27960 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.3982
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT1G15570 | Experimentalprotein complementation assay | FSW = 0.2865
| Unknown | CYCA23 (CYCLIN A23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G43080 | Experimentalprotein complementation assay | FSW = 0.2768
| Unknown | CYCA31 (CYCLIN A31) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G47230 | Experimentalprotein complementation assay | FSW = 0.2814
| Unknown | CYCLIN PUTATIVE |
AT5G67260 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.1401
| Unknown | CYCD32 (CYCLIN D32) CYCLIN-DEPENDENT PROTEIN KINASE |
AT3G50070 | Experimentalprotein complementation assay | FSW = 0.1293
| Unknown | CYCD33 (CYCLIN D33) CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G65420 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.4236
| Unknown | CYCD41 (CYCLIN D41) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G10440 | Experimentalprotein complementation assay | FSW = 0.3419
| Unknown | CYCD42 (CYCLIN D42) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G37630 | Experimentaltwo hybridprotein complementation assay | FSW = 0.4341
| Unknown | CYCD51 (CYCLIN D51) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G03270 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.3663
| Unknown | CYCD61 (CYCLIN D61) CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G27620 | Experimentalprotein complementation assay | FSW = 0.1592
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT4G28980 | Experimentaltwo hybrid | FSW = 0.5711
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE 1AT / CDK-ACTIVATING KINASE 1AT (CAK1) |
AT1G20930 | Experimentaltwo hybrid | FSW = 0.2699
| Unknown | CDKB22 (CYCLIN-DEPENDENT KINASE B22) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454