Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G22490 - ( CYCD21 (Cyclin D21) cyclin-dependent protein kinase regulator/ protein binding )
15 Proteins interacs with AT2G22490Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750 | ExperimentalAffinity Capture-MSprotein complementation assayaffinity technology | FSW = 0.1220
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G66750 | Experimentaltwo hybrid | FSW = 0.4198
| Unknown | CAK4 (CDK-ACTIVATING KINASE 4) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT5G48820 | Experimentalprotein complementation assay | FSW = 0.3333
| Unknown | ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT2G32710 | Experimentalprotein complementation assay | FSW = 0.3323
| Unknown | KRP4 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT3G24810 | Experimentalprotein complementation assay | FSW = 0.3874
| Unknown | ICK3 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT1G47870 | ExperimentalReconstituted Complex | FSW = 0.1861
| Unknown | ATE2F2 DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR |
AT2G23430 | Experimentalprotein complementation assay | FSW = 0.2367
| Unknown | ICK1 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT3G19150 | Experimentalprotein complementation assay | FSW = 0.3556
| Unknown | KRP6 (KIP-RELATED PROTEIN 6) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT2G27960 | ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.2456
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT1G76540 | Experimentalpull downReconstituted Complexprotein complementation assay | FSW = 0.3344
| Unknown | CDKB21 (CYCLIN-DEPENDENT KINASE B21) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT1G08180 | Experimental | FSW = 0.0381
| Unknown | UNKNOWN PROTEIN |
AT5G04470 | Experimentalfluorescence acceptor donor pair | FSW = 0.0863
| Unknown | SIM (SIAMESE) CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT3G54180 | Experimentalprotein complementation assay | FSW = 0.2365
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT2G27970 | Experimentalprotein complementation assay | FSW = 0.1997
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G12280 | Experimentalprotein complementation assay | FSW = 0.0224
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454