Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G54180 - ( CDKB11 (CYCLIN-DEPENDENT KINASE B11) cyclin-dependent protein kinase/ kinase/ protein binding )
74 Proteins interacs with AT3G54180Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G28000 | ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.0330
| Unknown | CPN60A (CHAPERONIN-60ALPHA) ATP BINDING / PROTEIN BINDING |
AT3G48750 | Experimentalpull downprotein complementation assay | FSW = 0.3264
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G66750 | Experimentalprotein complementation assay | FSW = 0.4032
| Unknown | CAK4 (CDK-ACTIVATING KINASE 4) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT3G24810 | Experimentalprotein complementation assay | FSW = 0.3333
| Unknown | ICK3 CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT5G48820 | Experimentalprotein complementation assay | FSW = 0.4339
| Unknown | ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT2G32710 | Experimentalprotein complementation assay | FSW = 0.4310
| Unknown | KRP4 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT1G18040 | Experimentalprotein complementation assay | FSW = 0.2660
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT3G19150 | Experimentalprotein complementation assay | FSW = 0.3747
| Unknown | KRP6 (KIP-RELATED PROTEIN 6) CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT1G49620 | Experimentalprotein complementation assay | FSW = 0.3490
| Unknown | ICK5 CYCLIN BINDING / CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR |
AT2G27970 | ExperimentalAffinity Capture-MSprotein complementation assaytwo hybridaffinity technology | FSW = 0.2559
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G64520 | ExperimentalAffinity Capture-MSaffinity technology | FSW = 0.0071
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT2G27960 | Experimentalpull downAffinity Capture-MSReconstituted Complexprotein complementation assaytwo hybridaffinity technology | FSW = 0.3042
| Unknown | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING |
AT3G63120 | Experimentaltwo hybrid | FSW = 0.0462
| Unknown | CYCP11 (CYCLIN P11) CYCLIN-DEPENDENT PROTEIN KINASE |
AT1G70210 | Experimentalpull downReconstituted Complexprotein complementation assay | FSW = 0.2452
| Unknown | CYCD11 (CYCLIN D11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G14750 | Experimental | FSW = 0.0769
| Unknown | SDS (SOLO DANCERS) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G37490 | Experimental | FSW = 0.0771
| Unknown | CYCB11 (CYCLIN B11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G65420 | ExperimentalReconstituted Complexprotein complementation assaytwo hybrid | FSW = 0.3743
| Unknown | CYCD41 (CYCLIN D41) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G10440 | ExperimentalAffinity Capture-Westernprotein complementation assay | FSW = 0.3126
| Unknown | CYCD42 (CYCLIN D42) CYCLIN-DEPENDENT PROTEIN KINASE |
AT1G15570 | Experimentaltwo hybridprotein complementation assay | FSW = 0.1837
| Unknown | CYCA23 (CYCLIN A23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G37630 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.3992
| Unknown | CYCD51 (CYCLIN D51) CYCLIN-DEPENDENT PROTEIN KINASE |
AT2G22490 | Experimentalprotein complementation assay | FSW = 0.2365
| Unknown | CYCD21 (CYCLIN D21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR/ PROTEIN BINDING |
AT3G50070 | Experimentalprotein complementation assay | FSW = 0.1929
| Unknown | CYCD33 (CYCLIN D33) CYCLIN-DEPENDENT PROTEIN KINASE |
AT2G38620 | Experimentalprotein complementation assay | FSW = 0.5469
| Unknown | CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G76540 | Experimentalprotein complementation assay | FSW = 0.5413
| Unknown | CDKB21 (CYCLIN-DEPENDENT KINASE B21) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT1G20930 | Experimentalprotein complementation assay | FSW = 0.2557
| Unknown | CDKB22 (CYCLIN-DEPENDENT KINASE B22) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE |
AT5G63610 | Experimentalprotein complementation assay | FSW = 0.1366
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G28980 | Experimentalprotein complementation assay | FSW = 0.3340
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE 1AT / CDK-ACTIVATING KINASE 1AT (CAK1) |
AT1G67580 | Experimentalprotein complementation assay | FSW = 0.1714
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G44110 | Experimentalprotein complementation assay | FSW = 0.1406
| Unknown | CYCA11 (CYCLIN A11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G25380 | Experimentalprotein complementation assay | FSW = 0.2478
| Unknown | CYCA21 (CYCLIN A21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G11300 | Experimentaltwo hybridprotein complementation assay | FSW = 0.2560
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G80370 | Experimentalprotein complementation assay | FSW = 0.1569
| Unknown | CYCA24 (CYCLIN A24) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G43080 | Experimentalprotein complementation assay | FSW = 0.2283
| Unknown | CYCA31 (CYCLIN A31) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G47230 | Experimentalprotein complementation assay | FSW = 0.2344
| Unknown | CYCLIN PUTATIVE |
AT5G06150 | Experimentalprotein complementation assay | FSW = 0.0443
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G17620 | Experimentalprotein complementation assay | FSW = 0.0123
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G20610 | Experimentalprotein complementation assay | FSW = 0.0798
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G16330 | Experimentalprotein complementation assay | FSW = 0.0964
| Unknown | CYCB31 (CYCLIN B31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G67260 | Experimentalprotein complementation assay | FSW = 0.2084
| Unknown | CYCD32 (CYCLIN D32) CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G03270 | Experimentalprotein complementation assay | FSW = 0.3030
| Unknown | CYCD61 (CYCLIN D61) CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G27620 | Experimentalprotein complementation assay | FSW = 0.2778
| Unknown | CYCH1 (CYCLIN H1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT2G27290 | Predictedtwo hybrid | FSW = 0.0936
| Unknown | UNKNOWN PROTEIN |
AT5G15680 | Predictedtwo hybrid | FSW = 0.0480
| Unknown | BINDING |
AT1G16970 | Predictedbiochemical | FSW = 0.0514
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT5G64630 | Predictedin vitroAffinity Capture-MS | FSW = 0.0261
| Unknown | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G22220 | Predictedin vivoin vivo | FSW = 0.0879
| Unknown | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT2G29570 | Predictedin vitro | FSW = 0.0476
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT5G52470 | PredictedAffinity Capture-MS | FSW = 0.0109
| Unknown | FIB1 (FIBRILLARIN 1) SNORNA BINDING |
AT2G20420 | Predictedtwo hybrid | FSW = 0.0185
| Unknown | SUCCINYL-COA LIGASE (GDP-FORMING) BETA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE BETA CHAIN PUTATIVE / SCS-BETA PUTATIVE |
AT5G08380 | Predictedtwo hybrid | FSW = 0.0539
| Unknown | ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G03730 | Predictedin vitroin vivoin vivoin vitro | FSW = 0.0263
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT2G37560 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT5G20850 | Predictedtwo hybrid | FSW = 0.0227
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G16590 | Predictedtwo hybrid | FSW = 0.0658
| Unknown | REV7 DNA BINDING |
AT1G31870 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | UNKNOWN PROTEIN |
AT2G26210 | Predictedtwo hybrid | FSW = 0.0178
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT4G11330 | Predictedtwo hybrid | FSW = 0.0299
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT5G25420 | Predictedtwo hybrid | FSW = 0.0126
| Unknown | XANTHINE/URACIL PERMEASE FAMILY PROTEIN |
AT5G45190 | Predictedtwo hybridin vitro | FSW = 0.0692
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G48630 | Predictedtwo hybrid | FSW = 0.0714
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G59160 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0090
| Unknown | TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G11980 | PredictedAffinity Capture-MS | FSW = 0.0355
| Unknown | RUB3 (UBIQUITIN-RELATED PROTEIN 3) |
AT3G04240 | PredictedAffinity Capture-MS | FSW = 0.0352
| Unknown | SEC (SECRET AGENT) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G12280 | Predictedin vitrobiochemicalin vivoin vitroin vivoAffinity Capture-MSbiochemical | FSW = 0.0648
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT4G11080 | Predictedin vivoin vitro | FSW = 0.0694
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT5G03830 | PredictedAffinity Capture-Western | FSW = 0.0268
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN MITOCHONDRION BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS P21CIP1-BINDING PROTEIN-RELATED (TAIRAT2G445101) HAS 225 BLAST HITS TO 225 PROTEINS IN 104 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 94 FUNGI - 68 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 36 (SOURCE NCBI BLINK) |
AT5G07590 | PredictedAffinity Capture-MS | FSW = 0.0253
| Unknown | WD-40 REPEAT PROTEIN FAMILY |
AT5G10960 | Predictedin vivoAffinity Capture-MS | FSW = 0.0223
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT4G36800 | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT5G26680 | PredictedAffinity Capture-MSbiochemicalReconstituted Complex | FSW = 0.0222
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G46280 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT5G58450 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | BINDING |
AT5G67100 | Predictedbiochemical | FSW = 0.0269
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT2G23080 | PredictedPhylogenetic profile method | FSW = 0.0137
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454