Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G63120 - ( CYCP11 (cyclin p11) cyclin-dependent protein kinase )

6 Proteins interacs with AT3G63120
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G48750

Experimental

two hybrid

FSW = 0.0256

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT3G54180

Experimental

two hybrid

FSW = 0.0462

Unknown

CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING
AT3G47520

Predicted

Phenotypic Enhancement

FSW = 0.0082

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0015

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G30820

Predicted

Phenotypic Enhancement

FSW = 0.0635

Unknown

CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED
AT3G60550

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1569

Unknown

CYCP32 (CYCLIN P32) CYCLIN-DEPENDENT PROTEIN KINASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454