Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G64630 - ( FAS2 (FASCIATA 2) nucleotide binding / protein binding )
61 Proteins interacs with AT5G64630Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G65470 | Experimentalcoimmunoprecipitation | FSW = 0.3462
| Class A:nucleus | FAS1 (FASCIATA 1) HISTONE BINDING |
AT5G58230 | Experimentalcoimmunoprecipitation | FSW = 0.0782
| Class B:plastidnucleus | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.0096
| Class C:nucleus | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT5G59690 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1141
| Class C:nucleus | HISTONE H4 |
AT5G43530 | PredictedPhenotypic Enhancement | FSW = 0.1742
| Class C:nucleus | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT3G48750 | Predictedin vitroAffinity Capture-MS | FSW = 0.0197
| Class C:nucleus | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G16970 | PredictedPhenotypic Enhancement | FSW = 0.1289
| Class C:nucleus | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT1G08130 | PredictedPhenotypic Enhancement | FSW = 0.1304
| Class C:nucleus | ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP) |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0189
| Class C:nucleus | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT5G67270 | PredictedPhenotypic Suppression | FSW = 0.1026
| Class C:nucleus | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT2G24490 | PredictedPhenotypic Enhancement | FSW = 0.0741
| Class C:nucleus | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT1G17790 | PredictedGene fusion method | FSW = 0.1701
| Class C:nucleus | DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN |
AT3G44530 | Predictedsynthetic growth defectsynthetic growth defectPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1527
| Class C:nucleus | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G35910 | PredictedPhenotypic Enhancement | FSW = 0.0591
| Class C:nucleus | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT5G17690 | Predictedtwo hybrid | FSW = 0.0226
| Class C:nucleus | TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT1G07370 | PredictedPhenotypic EnhancementAffinity Capture-WesternPhenotypic EnhancementPhenotypic Suppression | FSW = 0.1891
| Class C:nucleus | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT2G27470 | PredictedAffinity Capture-WesternPhenotypic Enhancement | FSW = 0.1554
| Class C:nucleus | NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR |
AT1G07660 | Predictedsynthetic growth defect | FSW = 0.0434
| Unknown | HISTONE H4 |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0049
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G01370 | PredictedPhenotypic Enhancement | FSW = 0.0597
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT3G02520 | PredictedPhenotypic Suppression | FSW = 0.1300
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G21750 | PredictedGene fusion method | FSW = 0.0485
| Unknown | ATPDIL1-1 (PDI-LIKE 1-1) PROTEIN DISULFIDE ISOMERASE |
AT4G26530 | Predictedtwo hybridtwo hybrid | FSW = 0.0326
| Unknown | FRUCTOSE-BISPHOSPHATE ALDOLASE PUTATIVE |
AT4G38740 | PredictedPhenotypic Enhancement | FSW = 0.0262
| Unknown | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G03690 | Predictedtwo hybrid | FSW = 0.0308
| Unknown | FRUCTOSE-BISPHOSPHATE ALDOLASE PUTATIVE |
AT5G51050 | PredictedGene fusion method | FSW = 0.1093
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G31970 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1296
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G41150 | PredictedPhenotypic Enhancement | FSW = 0.0875
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT5G20850 | PredictedPhenotypic Enhancement | FSW = 0.0825
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT5G54260 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1351
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G54180 | Predictedin vitroAffinity Capture-MS | FSW = 0.0261
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT1G66740 | Predictedsynthetic growth defectPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementin vivoPhenotypic EnhancementPhenotypic EnhancementAffinity Capture-MS | FSW = 0.1437
| Unknown | SGA2 |
AT5G38110 | Predictedin vivoAffinity Capture-MS | FSW = 0.0271
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.1175
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G54390 | PredictedPhenotypic Enhancement | FSW = 0.1340
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G64550 | PredictedPhenotypic Enhancement | FSW = 0.0113
| Unknown | ATGCN3 TRANSPORTER |
AT1G67500 | PredictedPhenotypic Enhancement | FSW = 0.0911
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT2G02760 | PredictedPhenotypic Enhancement | FSW = 0.1236
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G44150 | PredictedPhenotypic Enhancement | FSW = 0.0539
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.1394
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G03340 | Predictedtwo hybrid | FSW = 0.0111
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
AT3G13170 | PredictedPhenotypic Suppression | FSW = 0.0485
| Unknown | ATSPO11-1 ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ CATALYTIC |
AT3G42660 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1032
| Unknown | NUCLEOTIDE BINDING |
AT4G13660 | PredictedReconstituted ComplexPhenotypic Enhancement | FSW = 0.0625
| Unknown | PRR2 (PINORESINOL REDUCTASE 2) PINORESINOL REDUCTASE |
AT5G10400 | PredictedPhenotypic Enhancement | FSW = 0.1765
| Unknown | HISTONE H3 |
AT5G26680 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancementinteraction prediction | FSW = 0.1417
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G41700 | PredictedPhenotypic Suppression | FSW = 0.0315
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G46030 | PredictedPhenotypic Enhancement | FSW = 0.1089
| Unknown | UNKNOWN PROTEIN |
AT5G48120 | PredictedPhenotypic Suppression | FSW = 0.0389
| Unknown | BINDING |
AT5G60020 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | LAC17 (LACCASE 17) LACCASE |
AT3G46320 | PredictedPhenotypic Enhancement | FSW = 0.0939
| Unknown | HISTONE H4 |
AT3G58830 | Predictedsynthetic growth defect | FSW = 0.0096
| Unknown | HALOACID DEHALOGENASE (HAD) SUPERFAMILY PROTEIN |
AT3G62930 | Predictedinterologs mapping | FSW = 0.0158
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT5G10390 | PredictedPhenotypic Enhancement | FSW = 0.1959
| Unknown | HISTONE H3 |
AT5G43500 | PredictedPhenotypic Suppression | FSW = 0.1408
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G27945 | PredictedGene fusion method | FSW = 0.0148
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G61370 | PredictedGene fusion method | FSW = 0.0515
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT3G53830 | PredictedGene fusion method | FSW = 0.1291
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN / UVB-RESISTANCE PROTEIN-RELATED |
AT4G29730 | PredictedGene fusion method | FSW = 0.0308
| Unknown | NFC5 (NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 5) |
AT1G80150 | PredictedGene fusion method | FSW = 0.0312
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G03440 | PredictedGene fusion method | FSW = 0.0317
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454