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AT1G55920 - ( ATSERAT21 (SERINE ACETYLTRANSFERASE 21) serine O-acetyltransferase )

96 Proteins interacs with AT1G55920

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G14880	Experimental Reconstituted Complex Co-crystal Structure in vitro affinity technology Co-crystallization	FSW = 0.0198	Class A: plastid nucleus Class B: vacuole plasma membrane peroxisome cytosol Class D: cytosol (p = 0.67)	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE
AT5G15840	Experimental	FSW = 0.0051	Class A: nucleus Class B: plastid	CO (CONSTANS) TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT4G05420	Experimental	FSW = 0.0124	Class D: cytosol (p = 0.67)	DDB1A (DAMAGED DNA BINDING PROTEIN 1A) DNA BINDING / PROTEIN BINDING
AT5G15090	Predicted Synthetic Lethality	FSW = 0.0377	Class C: plastid nucleus	VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT4G27090	Predicted Phenotypic Enhancement	FSW = 0.2608	Class C: plastid nucleus	60S RIBOSOMAL PROTEIN L14 (RPL14B)
AT3G09630	Predicted Phenotypic Enhancement	FSW = 0.0252	Class C: plastid nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT5G65430	Predicted Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.1261	Class C: plastid nucleus	GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G47520	Predicted Phenotypic Enhancement Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.1817	Class C: plastid	MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT5G09590	Predicted Phenotypic Enhancement	FSW = 0.2392	Class C: plastid	MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT1G20260	Predicted Phenotypic Suppression	FSW = 0.0570	Class C: plastid	HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT4G35090	Predicted Phenotypic Enhancement	FSW = 0.1535	Class C: plastid	CAT2 (CATALASE 2) CATALASE
AT3G55400	Predicted Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.2157	Class C: plastid	OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT2G45300	Predicted Phenotypic Enhancement	FSW = 0.0210	Class C: plastid	3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT5G51820	Predicted Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.1305	Class C: plastid	PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT2G43810	Predicted Phenotypic Enhancement	FSW = 0.0350	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G76300	Predicted Phenotypic Enhancement	FSW = 0.1700	Class C: nucleus	SMD3 (SNRNP CORE PROTEIN SMD3)
AT2G34450	Predicted Phenotypic Enhancement	FSW = 0.2641	Class C: nucleus	HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN
AT3G50670	Predicted Affinity Capture-MS	FSW = 0.0221	Class C: nucleus	U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G21700	Predicted two hybrid	FSW = 0.0021	Class C: nucleus	SGP2 GTP BINDING
AT1G01210	Predicted Phenotypic Enhancement	FSW = 0.1246	Class C: nucleus	DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN
AT5G64630	Predicted Phenotypic Enhancement	FSW = 0.0096	Class C: nucleus	FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G06960	Predicted Phenotypic Enhancement	FSW = 0.0129	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT3G07260	Predicted Phenotypic Enhancement	FSW = 0.1124	Class C: nucleus	FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN
AT3G13445	Predicted Phenotypic Enhancement	FSW = 0.1656	Class C: nucleus	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT3G52250	Predicted Phenotypic Enhancement	FSW = 0.1316	Class C: nucleus	DNA BINDING / TRANSCRIPTION FACTOR
AT1G53165	Predicted Phenotypic Enhancement	FSW = 0.1366	Class C: nucleus	ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G72560	Predicted Phenotypic Enhancement	FSW = 0.0131	Class C: nucleus	PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING
AT2G15430	Predicted Phenotypic Enhancement	FSW = 0.0874	Class C: nucleus	NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G25340	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.1164	Class C: nucleus	IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT4G39160	Predicted Phenotypic Enhancement	FSW = 0.1138	Class C: nucleus	DNA BINDING / TRANSCRIPTION FACTOR
AT4G36130	Predicted Phenotypic Suppression	FSW = 0.0419	Unknown	60S RIBOSOMAL PROTEIN L8 (RPL8C)
AT3G08710	Predicted Phenotypic Enhancement	FSW = 0.1287	Unknown	ATH9 (THIOREDOXIN H-TYPE 9)
AT3G30390	Predicted two hybrid	FSW = 0.0955	Unknown	AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G13450	Predicted Phenotypic Enhancement	FSW = 0.0542	Unknown	ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE
AT2G20800	Predicted Phenotypic Enhancement	FSW = 0.0571	Unknown	NDB4 (NAD(P)H DEHYDROGENASE B4) NADH DEHYDROGENASE
AT4G33090	Predicted Phenotypic Enhancement	FSW = 0.1107	Unknown	APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT5G26340	Predicted Phenotypic Enhancement	FSW = 0.1865	Unknown	MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT2G39480	Predicted Phenotypic Enhancement	FSW = 0.2099	Unknown	PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G80050	Predicted Synthetic Lethality	FSW = 0.1232	Unknown	APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT3G29800	Predicted Phenotypic Enhancement	FSW = 0.2206	Unknown	AAA-TYPE ATPASE FAMILY
AT2G20510	Predicted Synthetic Lethality	FSW = 0.0656	Unknown	ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE
AT2G30160	Predicted Phenotypic Suppression	FSW = 0.1336	Unknown	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT2G17270	Predicted Phenotypic Enhancement	FSW = 0.0879	Unknown	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT4G33710	Predicted Phenotypic Enhancement	FSW = 0.0264	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT4G33730	Predicted Phenotypic Enhancement	FSW = 0.1945	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G38960	Predicted Phenotypic Enhancement	FSW = 0.0268	Unknown	AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT5G56760	Predicted Phylogenetic profile method Co-expression	FSW = 0.0327	Unknown	ATSERAT11 (ARABIDOPSIS THALIANA SERINE ACETYLTRANSFERASE 11) SERINE O-ACETYLTRANSFERASE
AT5G28060	Predicted Phenotypic Enhancement	FSW = 0.2760	Unknown	40S RIBOSOMAL PROTEIN S24 (RPS24B)
AT4G39100	Predicted Phenotypic Enhancement	FSW = 0.1576	Unknown	SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR
AT4G15900	Predicted Phenotypic Enhancement	FSW = 0.0980	Unknown	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G17190	Predicted Phenotypic Enhancement	FSW = 0.0724	Unknown	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G07340	Predicted Phenotypic Enhancement	FSW = 0.0546	Unknown	ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G20693	Predicted Phenotypic Enhancement	FSW = 0.1306	Unknown	HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G49520	Predicted Phenotypic Enhancement	FSW = 0.1564	Unknown	SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT1G06830	Predicted Phenotypic Enhancement	FSW = 0.0443	Unknown	GLUTAREDOXIN FAMILY PROTEIN
AT1G15440	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0443	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G21370	Predicted Phenotypic Enhancement	FSW = 0.0692	Unknown	UNKNOWN PROTEIN
AT1G23460	Predicted Phenotypic Enhancement	FSW = 0.1148	Unknown	POLYGALACTURONASE
AT1G29970	Predicted Phenotypic Enhancement	FSW = 0.0954	Unknown	RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)
AT1G31170	Predicted Phenotypic Suppression	FSW = 0.0724	Unknown	SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS
AT1G61670	Predicted Phenotypic Enhancement	FSW = 0.2783	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK)
AT1G68390	Predicted Phenotypic Enhancement	FSW = 0.0559	Unknown	UNKNOWN PROTEIN
AT1G75290	Predicted Phenotypic Enhancement	FSW = 0.0219	Unknown	OXIDOREDUCTASE ACTING ON NADH OR NADPH
AT1G76920	Predicted Phenotypic Enhancement	FSW = 0.2634	Unknown	F-BOX FAMILY PROTEIN (FBX3)
AT1G78770	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.0691	Unknown	CELL DIVISION CYCLE FAMILY PROTEIN
AT1G80710	Predicted Phenotypic Enhancement	FSW = 0.0444	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G01830	Predicted Phenotypic Enhancement	FSW = 0.0954	Unknown	WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT2G24960	Predicted Phenotypic Enhancement	FSW = 0.1981	Unknown	UNKNOWN PROTEIN
AT2G27340	Predicted Phenotypic Enhancement	FSW = 0.1199	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT2G29190	Predicted Phenotypic Enhancement Synthetic Lethality	FSW = 0.2681	Unknown	APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING
AT2G31260	Predicted Phenotypic Enhancement	FSW = 0.1384	Unknown	APG9 (AUTOPHAGY 9)
AT2G32765	Predicted Phenotypic Suppression	FSW = 0.1429	Unknown	SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG
AT2G34750	Predicted Phenotypic Enhancement	FSW = 0.1102	Unknown	RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN
AT2G48100	Predicted Synthetic Lethality	FSW = 0.1242	Unknown	EXONUCLEASE FAMILY PROTEIN
AT3G13210	Predicted Phenotypic Suppression	FSW = 0.0505	Unknown	CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT3G14740	Predicted Phenotypic Enhancement	FSW = 0.1558	Unknown	PHD FINGER FAMILY PROTEIN
AT3G29060	Predicted Phenotypic Enhancement	FSW = 0.2398	Unknown	LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 6 PLANT STRUCTURES EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE 4 ANTHESIS PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G140401) HAS 970 BLAST HITS TO 889 PROTEINS IN 159 SPECIES ARCHAE - 2 BACTERIA - 5 METAZOA - 379 FUNGI - 260 PLANTS - 176 VIRUSES - 28 OTHER EUKARYOTES - 120 (SOURCE NCBI BLINK)
AT3G59540	Predicted Synthetic Lethality	FSW = 0.0992	Unknown	60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT3G61210	Predicted Phenotypic Suppression	FSW = 0.0424	Unknown	EMBRYO-ABUNDANT PROTEIN-RELATED
AT4G10360	Predicted Phenotypic Suppression	FSW = 0.0530	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK)
AT4G23895	Predicted Phenotypic Enhancement	FSW = 0.0784	Unknown	PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN-RELATED
AT4G24040	Predicted Phenotypic Enhancement	FSW = 0.2011	Unknown	TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE
AT4G38250	Predicted Phenotypic Enhancement	FSW = 0.0437	Unknown	AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G04420	Predicted Phenotypic Enhancement	FSW = 0.0717	Unknown	KELCH REPEAT-CONTAINING PROTEIN
AT5G04800	Predicted Phenotypic Enhancement	FSW = 0.0568	Unknown	40S RIBOSOMAL PROTEIN S17 (RPS17D)
AT5G38110	Predicted Phenotypic Enhancement	FSW = 0.1373	Unknown	ASF1B (ANTI- SILENCING FUNCTION 1B)
AT5G52200	Predicted Phenotypic Enhancement	FSW = 0.2355	Unknown	UNKNOWN PROTEIN
AT5G54940	Predicted Phenotypic Enhancement	FSW = 0.0492	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT5G57190	Predicted Phenotypic Enhancement	FSW = 0.2373	Unknown	PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE
AT1G66740	Predicted Phenotypic Enhancement	FSW = 0.0133	Unknown	SGA2
AT2G37420	Predicted Phenotypic Suppression	FSW = 0.1628	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT2G46230	Predicted Affinity Capture-MS	FSW = 0.0144	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF652 (INTERPROIPR006984) NUCLEOTIDE BINDING PROTEIN PINC (INTERPROIPR006596) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G265301) HAS 493 BLAST HITS TO 493 PROTEINS IN 165 SPECIES ARCHAE - 21 BACTERIA - 0 METAZOA - 192 FUNGI - 143 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 84 (SOURCE NCBI BLINK)
AT3G06483	Predicted Phenotypic Enhancement	FSW = 0.0781	Unknown	PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT4G00800	Predicted Phenotypic Enhancement	FSW = 0.1465	Unknown	BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G33950	Predicted Phenotypic Enhancement	FSW = 0.2150	Unknown	OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE
AT1G02690	Predicted two hybrid	FSW = 0.0030	Unknown	IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER

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Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT1G55920 - ( ATSERAT21 (SERINE ACETYLTRANSFERASE 21) serine O-acetyltransferase )

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