Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G21700 - ( SGP2 GTP binding )
73 Proteins interacs with AT3G21700Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G14420 | PredictedAffinity Capture-MS | FSW = 0.0216
| Class C:nucleus | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
AT1G55920 | Predictedtwo hybrid | FSW = 0.0021
| Class C:nucleus | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT5G22330 | PredictedAffinity Capture-MS | FSW = 0.0121
| Class C:nucleus | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT3G09840 | PredictedAffinity Capture-MS | FSW = 0.0171
| Class C:nucleus | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
AT4G30220 | Predictedtwo hybrid | FSW = 0.0077
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT5G54840 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3951
| Class C:nucleus | SGP1 GTP BINDING |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0060
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT3G18600 | PredictedAffinity Capture-MS | FSW = 0.0104
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G15550 | PredictedAffinity Capture-MS | FSW = 0.0160
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G50370 | PredictedAffinity Capture-MS | FSW = 0.0292
| Unknown | ADENYLATE KINASE PUTATIVE |
AT3G16240 | Predictedtwo hybrid | FSW = 0.0111
| Unknown | DELTA-TIP AMMONIA TRANSPORTER/ METHYLAMMONIUM TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL |
AT1G12840 | PredictedAffinity Capture-MS | FSW = 0.0213
| Unknown | DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0134
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G11010 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0124
| Unknown | NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE |
AT3G52140 | PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT2G43750 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | OASB (O-ACETYLSERINE (THIOL) LYASE B) CYSTEINE SYNTHASE |
AT5G54770 | Predictedtwo hybrid | FSW = 0.0175
| Unknown | THI1 PROTEIN HOMODIMERIZATION |
AT4G08870 | Predictedtwo hybrid | FSW = 0.0265
| Unknown | ARGINASE PUTATIVE |
AT1G44318 | Predictedtwo hybrid | FSW = 0.0351
| Unknown | HEMB2 CATALYTIC/ METAL ION BINDING / PORPHOBILINOGEN SYNTHASE |
AT1G19660 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0081
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT4G23430 | PredictedSynthetic Lethality | FSW = 0.0144
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G37690 | Predictedtwo hybrid | FSW = 0.0180
| Unknown | PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE PUTATIVE / AIR CARBOXYLASE PUTATIVE |
AT2G17265 | Predictedtwo hybrid | FSW = 0.0260
| Unknown | HSK (HOMOSERINE KINASE) HOMOSERINE KINASE |
AT1G09180 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1) GTP BINDING |
AT2G16600 | PredictedAffinity Capture-MS | FSW = 0.0057
| Unknown | ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G03330 | PredictedAffinity Capture-MS | FSW = 0.0312
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G05420 | PredictedAffinity Capture-Western | FSW = 0.0132
| Unknown | ACBP4 (ACYL-COA BINDING PROTEIN 4) ACYL-COA BINDING |
AT1G43670 | Predictedtwo hybrid | FSW = 0.0550
| Unknown | FRUCTOSE-16-BISPHOSPHATASE PUTATIVE / D-FRUCTOSE-16-BISPHOSPHATE 1-PHOSPHOHYDROLASE PUTATIVE / FBPASE PUTATIVE |
AT4G38600 | PredictedAffinity Capture-MS | FSW = 0.0081
| Unknown | KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE |
AT3G10300 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G56760 | PredictedAffinity Capture-Westernfluorescence acceptor donor pairfluorescence acceptor donor pair | FSW = 0.0241
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT1G30230 | PredictedAffinity Capture-MS | FSW = 0.0373
| Unknown | ELONGATION FACTOR 1-BETA / EF-1-BETA |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT3G03250 | Predictedtwo hybrid | FSW = 0.0211
| Unknown | UGP (UDP-GLUCOSE PYROPHOSPHORYLASE) UTPGLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT3G55410 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
AT1G14980 | Predictedtwo hybridtwo hybrid | FSW = 0.0246
| Unknown | CPN10 (CHAPERONIN 10) CHAPERONE BINDING |
AT2G46110 | Predictedtwo hybrid | FSW = 0.0150
| Unknown | KPHMT1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1) 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
AT2G41380 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT1G04260 | Predictedtwo hybrid | FSW = 0.0088
| Unknown | MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING |
AT1G30000 | Predictedtwo hybrid | FSW = 0.0275
| Unknown | GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN |
AT5G26710 | PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT2G21790 | PredictedAffinity Capture-MS | FSW = 0.0362
| Unknown | RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT5G14800 | Predictedtwo hybrid | FSW = 0.0161
| Unknown | P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE |
AT3G23580 | PredictedAffinity Capture-MS | FSW = 0.0274
| Unknown | RNR2A (RIBONUCLEOTIDE REDUCTASE 2A) RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT2G45790 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | PMM (PHOSPHOMANNOMUTASE) PHOSPHOMANNOMUTASE |
AT2G31020 | PredictedAffinity Capture-Western | FSW = 0.0072
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT5G19150 | PredictedAffinity Capture-MS | FSW = 0.0081
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT4G27960 | PredictedAffinity Capture-Westernfluorescence acceptor donor pairfluorescence acceptor donor pair | FSW = 0.0082
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT4G32350 | PredictedAffinity Capture-MS | FSW = 0.0476
| Unknown | UNKNOWN PROTEIN |
AT4G04210 | PredictedAffinity Capture-MS | FSW = 0.0231
| Unknown | PUX4 PROTEIN BINDING |
AT4G17830 | PredictedAffinity Capture-MS | FSW = 0.0131
| Unknown | PEPTIDASE M20/M25/M40 FAMILY PROTEIN |
AT1G04170 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT1G33360 | PredictedAffinity Capture-MS | FSW = 0.0468
| Unknown | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX PUTATIVE |
AT2G03820 | PredictedAffinity Capture-MS | FSW = 0.0175
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
AT1G53570 | PredictedSynthetic Rescueinterologs mappinginterologs mappinginterologs mappinginterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternColocalizationinterologs mappingSynthetic LethalitySynthetic Rescue | FSW = 0.0864
| Unknown | MAP3KA ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G29550 | PredictedAffinity Capture-MS | FSW = 0.0205
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE |
AT3G46940 | PredictedAffinity Capture-MS | FSW = 0.0213
| Unknown | DEOXYURIDINE 5-TRIPHOSPHATE NUCLEOTIDOHYDROLASE FAMILY |
AT1G01750 | PredictedAffinity Capture-MS | FSW = 0.0064
| Unknown | ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) ACTIN BINDING |
AT2G22480 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT3G19420 | PredictedSynthetic Rescueinterologs mappingAffinity Capture-Westerninterologs mappingReconstituted ComplexSynthetic LethalitySynthetic Rescuetwo hybrid | FSW = 0.0288
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT5G35980 | Predictedinterologs mapping | FSW = 0.0294
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G17720 | PredictedPhenotypic Suppression | FSW = 0.0333
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT3G27000 | PredictedSynthetic Lethality | FSW = 0.0113
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G13580 | Predictedtwo hybrid | FSW = 0.0070
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT5G51970 | Predictedtwo hybridtwo hybrid | FSW = 0.0296
| Unknown | SORBITOL DEHYDROGENASE PUTATIVE / L-IDITOL 2-DEHYDROGENASE PUTATIVE |
AT1G24290 | Predictedtwo hybrid | FSW = 0.0117
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G07400 | Predictedtwo hybrid | FSW = 0.0328
| Unknown | 178 KDA CLASS I HEAT SHOCK PROTEIN (HSP178-CI) |
AT3G13700 | Predictedtwo hybrid | FSW = 0.0195
| Unknown | RNA-BINDING PROTEIN PUTATIVE |
AT3G07270 | Predictedtwo hybrid | FSW = 0.0410
| Unknown | GTP CYCLOHYDROLASE I |
AT5G55130 | Predictedtwo hybrid | FSW = 0.0205
| Unknown | CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE |
AT5G04710 | Predictedtwo hybrid | FSW = 0.0129
| Unknown | ASPARTYL AMINOPEPTIDASE PUTATIVE |
AT5G55810 | Predictedtwo hybrid | FSW = 0.0289
| Unknown | ATNMNAT (A THALIANA NICOTINATE/NICOTINAMIDE MONONUCLEOTIDE ADENYLTRANSFERASE) NICOTINAMIDE-NUCLEOTIDE ADENYLYLTRANSFERASE/ NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE |
AT4G26780 | Predictedtwo hybrid | FSW = 0.0109
| Unknown | AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454