Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G38600 - ( KAK (KAKTUS) ubiquitin-protein ligase )
23 Proteins interacs with AT4G38600Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G20010 | PredictedAffinity Capture-MS | FSW = 0.0369
| Class C:plasma membrane | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0448
| Class C:plasma membrane | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0241
| Class C:plasma membrane | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT1G72370 | PredictedAffinity Capture-MS | FSW = 0.0278
| Class C:plasma membrane | P40 STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G45000 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0508
| Class C:plasma membrane | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT1G13210 | PredictedAffinity Capture-MS | FSW = 0.0126
| Class C:plasma membrane | ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING |
AT1G64230 | PredictedAffinity Capture-MSAffinity Capture-MSbiochemicalEnriched domain pairCo-expression | FSW = 0.0108
| Class C:plasma membrane | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT5G19990 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted Complex | FSW = 0.0297
| Class C:plasma membrane | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT2G20580 | PredictedAffinity Capture-Western | FSW = 0.0684
| Class C:plasma membrane | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT2G05710 | PredictedAffinity Capture-MS | FSW = 0.0268
| Unknown | ACONITATE HYDRATASE CYTOPLASMIC PUTATIVE / CITRATE HYDRO-LYASE/ACONITASE PUTATIVE |
AT3G51260 | PredictedAffinity Capture-Western | FSW = 0.0401
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G29900 | PredictedAffinity Capture-MS | FSW = 0.0369
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT2G31810 | PredictedAffinity Capture-MS | FSW = 0.0635
| Unknown | ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE |
AT3G12050 | PredictedAffinity Capture-MS | FSW = 0.1405
| Unknown | AHA1 DOMAIN-CONTAINING PROTEIN |
AT3G21700 | PredictedAffinity Capture-MS | FSW = 0.0081
| Unknown | SGP2 GTP BINDING |
AT2G36170 | PredictedAffinity Capture-MS | FSW = 0.0136
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT4G26910 | Predictedtwo hybrid | FSW = 0.0252
| Unknown | 2-OXOACID DEHYDROGENASE FAMILY PROTEIN |
AT4G38330 | PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S HLY-III RELATED (INTERPROIPR004254) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G382901) HAS 8 BLAST HITS TO 8 PROTEINS IN 1 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 8 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK) |
AT5G01670 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | ALDOSE REDUCTASE PUTATIVE |
AT2G03410 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | MO25 FAMILY PROTEIN |
AT1G10730 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT3G03960 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | CHAPERONIN PUTATIVE |
AT5G02880 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3457
| Unknown | UPL4 UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454