Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G13210 - ( ACAl (autoinhibited Ca2+/ATPase II) ATPase coupled to transmembrane movement of ions phosphorylative mechanism / calmodulin binding )
46 Proteins interacs with AT1G13210Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G04930 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3755
| Class C:plasma membrane | ALA1 (AMINOPHOSPHOLIPID ATPASE1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT1G10630 | Predictedinterologs mapping | FSW = 0.0349
| Class C:plasma membrane | ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP BINDING / COPPER ION BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT3G28710 | PredictedAffinity Capture-MS | FSW = 0.0151
| Class C:plasma membrane | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT1G26130 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4068
| Class C:plasma membrane | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT3G08530 | PredictedSynthetic Lethality | FSW = 0.0088
| Class C:plasma membrane | CLATHRIN HEAVY CHAIN PUTATIVE |
AT1G79940 | Predictedinterologs mapping | FSW = 0.0465
| Class C:plasma membrane | ATERDJ2A HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G08560 | Predictedinterologs mapping | FSW = 0.0687
| Class C:plasma membrane | SYP111 (SYNTAXIN OF PLANTS 111) SNAP RECEPTOR |
AT1G59820 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5088
| Class C:plasma membrane | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT3G25610 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4068
| Class C:plasma membrane | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT4G38600 | PredictedAffinity Capture-MS | FSW = 0.0126
| Class C:plasma membrane | KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE |
AT1G08820 | Predictedinterologs mapping | FSW = 0.0534
| Class C:plasma membrane | VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) STRUCTURAL MOLECULE |
AT1G06400 | PredictedSynthetic Lethality | FSW = 0.0305
| Class C:plasma membrane | ARA-2 GTP BINDING |
AT3G27170 | Predictedinterologs mapping | FSW = 0.0744
| Unknown | CLC-B (CHLORIDE CHANNEL B) ANION CHANNEL/ VOLTAGE-GATED CHLORIDE CHANNEL |
AT4G01320 | Predictedinterologs mapping | FSW = 0.0723
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT2G30710 | Predictedinterologs mapping | FSW = 0.1056
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT5G13710 | Predictedinterologs mapping | FSW = 0.0335
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT3G66658 | Predictedinterologs mapping | FSW = 0.0523
| Unknown | ALDH22A1 (ALDEHYDE DEHYDROGENASE 22A1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G07420 | Predictedinterologs mapping | FSW = 0.0864
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT1G26340 | Predictedinterologs mapping | FSW = 0.0189
| Unknown | CB5-A (CYTOCHROME B5 ISOFORM A) HEME BINDING |
AT1G04260 | Predictedinterologs mapping | FSW = 0.1252
| Unknown | MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING |
AT1G10130 | Predictedinterologs mappingEnriched domain pairCo-expression | FSW = 0.1094
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT3G05710 | Predictedinterologs mapping | FSW = 0.1238
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT1G13980 | Predictedinterologs mappingAffinity Capture-Westernsynthetic growth defecttwo hybrid | FSW = 0.0163
| Unknown | GN (GNOM) GTPGDP ANTIPORTER/ PROTEIN HOMODIMERIZATION |
AT1G54280 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3755
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT1G68710 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4068
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT1G72700 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4068
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT3G13900 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1268
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT3G27870 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4068
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT1G17500 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3905
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT5G44240 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4068
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT3G28730 | PredictedAffinity Capture-MS | FSW = 0.0081
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT1G13170 | PredictedAffinity Capture-MS | FSW = 0.1282
| Unknown | ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D) OXYSTEROL BINDING |
AT3G50860 | Predictedinterologs mapping | FSW = 0.1012
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT3G05000 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.1135
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN |
AT3G04080 | Predictedinterologs mapping | FSW = 0.1897
| Unknown | ATAPY1 (APYRASE 1) ATPASE/ CALMODULIN BINDING / NUCLEOTIDE DIPHOSPHATASE |
AT2G28850 | Predictedinterologs mapping | FSW = 0.0874
| Unknown | CYP710A3 (CYTOCHROME P450 FAMILY 710 SUBFAMILY A POLYPEPTIDE 3) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT1G70790 | Predictedinterologs mapping | FSW = 0.1056
| Unknown | C2 DOMAIN-CONTAINING PROTEIN |
AT1G57600 | Predictedinterologs mapping | FSW = 0.1319
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G52360 | Predictedinterologs mapping | FSW = 0.0568
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT1G48760 | Predictedinterologs mapping | FSW = 0.1113
| Unknown | DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G12340 | Predictedinterologs mapping | FSW = 0.0647
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT5G49510 | PredictedSynthetic Lethality | FSW = 0.0137
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G23290 | PredictedSynthetic Lethality | FSW = 0.0194
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G09350 | PredictedSynthetic Lethality | FSW = 0.0469
| Unknown | PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT3G18430 | PredictedSynthetic Lethality | FSW = 0.0246
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT2G40430 | Predictedtwo hybrid | FSW = 0.0082
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454