Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G13210 - ( ACAl (autoinhibited Ca2+/ATPase II) ATPase coupled to transmembrane movement of ions phosphorylative mechanism / calmodulin binding )

46 Proteins interacs with AT1G13210
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G04930

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3755

Class C:

plasma membrane

ALA1 (AMINOPHOSPHOLIPID ATPASE1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT1G10630

Predicted

interologs mapping

FSW = 0.0349

Class C:

plasma membrane

ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP BINDING / COPPER ION BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT3G28710

Predicted

Affinity Capture-MS

FSW = 0.0151

Class C:

plasma membrane

H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT1G26130

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4068

Class C:

plasma membrane

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT3G08530

Predicted

Synthetic Lethality

FSW = 0.0088

Class C:

plasma membrane

CLATHRIN HEAVY CHAIN PUTATIVE
AT1G79940

Predicted

interologs mapping

FSW = 0.0465

Class C:

plasma membrane

ATERDJ2A HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT1G08560

Predicted

interologs mapping

FSW = 0.0687

Class C:

plasma membrane

SYP111 (SYNTAXIN OF PLANTS 111) SNAP RECEPTOR
AT1G59820

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.5088

Class C:

plasma membrane

ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER
AT3G25610

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4068

Class C:

plasma membrane

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT4G38600

Predicted

Affinity Capture-MS

FSW = 0.0126

Class C:

plasma membrane

KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE
AT1G08820

Predicted

interologs mapping

FSW = 0.0534

Class C:

plasma membrane

VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) STRUCTURAL MOLECULE
AT1G06400

Predicted

Synthetic Lethality

FSW = 0.0305

Class C:

plasma membrane

ARA-2 GTP BINDING
AT3G27170

Predicted

interologs mapping

FSW = 0.0744

Unknown

CLC-B (CHLORIDE CHANNEL B) ANION CHANNEL/ VOLTAGE-GATED CHLORIDE CHANNEL
AT4G01320

Predicted

interologs mapping

FSW = 0.0723

Unknown

ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE
AT2G30710

Predicted

interologs mapping

FSW = 0.1056

Unknown

RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT5G13710

Predicted

interologs mapping

FSW = 0.0335

Unknown

SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE
AT3G66658

Predicted

interologs mapping

FSW = 0.0523

Unknown

ALDH22A1 (ALDEHYDE DEHYDROGENASE 22A1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT1G07420

Predicted

interologs mapping

FSW = 0.0864

Unknown

SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT1G26340

Predicted

interologs mapping

FSW = 0.0189

Unknown

CB5-A (CYTOCHROME B5 ISOFORM A) HEME BINDING
AT1G04260

Predicted

interologs mapping

FSW = 0.1252

Unknown

MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING
AT1G10130

Predicted

interologs mapping

Enriched domain pair

Co-expression

FSW = 0.1094

Unknown

ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT3G05710

Predicted

interologs mapping

FSW = 0.1238

Unknown

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT1G13980

Predicted

interologs mapping

Affinity Capture-Western

synthetic growth defect

two hybrid

FSW = 0.0163

Unknown

GN (GNOM) GTPGDP ANTIPORTER/ PROTEIN HOMODIMERIZATION
AT1G54280

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3755

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT1G68710

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4068

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT1G72700

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4068

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT3G13900

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1268

Unknown

ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT3G27870

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4068

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT1G17500

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3905

Unknown

ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT5G44240

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4068

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT3G28730

Predicted

Affinity Capture-MS

FSW = 0.0081

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT1G13170

Predicted

Affinity Capture-MS

FSW = 0.1282

Unknown

ORP1D (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1D) OXYSTEROL BINDING
AT3G50860

Predicted

interologs mapping

FSW = 0.1012

Unknown

CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT3G05000

Predicted

interologs mapping

Synthetic Lethality

FSW = 0.1135

Unknown

TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN
AT3G04080

Predicted

interologs mapping

FSW = 0.1897

Unknown

ATAPY1 (APYRASE 1) ATPASE/ CALMODULIN BINDING / NUCLEOTIDE DIPHOSPHATASE
AT2G28850

Predicted

interologs mapping

FSW = 0.0874

Unknown

CYP710A3 (CYTOCHROME P450 FAMILY 710 SUBFAMILY A POLYPEPTIDE 3) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING
AT1G70790

Predicted

interologs mapping

FSW = 0.1056

Unknown

C2 DOMAIN-CONTAINING PROTEIN
AT1G57600

Predicted

interologs mapping

FSW = 0.1319

Unknown

MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN
AT1G52360

Predicted

interologs mapping

FSW = 0.0568

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE
AT1G48760

Predicted

interologs mapping

FSW = 0.1113

Unknown

DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT1G12340

Predicted

interologs mapping

FSW = 0.0647

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK)
AT5G49510

Predicted

Synthetic Lethality

FSW = 0.0137

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G23290

Predicted

Synthetic Lethality

FSW = 0.0194

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G09350

Predicted

Synthetic Lethality

FSW = 0.0469

Unknown

PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT3G18430

Predicted

Synthetic Lethality

FSW = 0.0246

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT2G40430

Predicted

two hybrid

FSW = 0.0082

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK)

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454