Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G40430 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Tumor suppressor protein Gltscr2 (InterProIPR011211) P60-like (InterProIPR011687) Has 601 Blast hits to 544 proteins in 148 species Archae - 0 Bacteria - 22 Metazoa - 201 Fungi - 103 Plants - 32 Viruses - 0 Other Eukaryotes - 243 (source NCBI BLink) )
37 Proteins interacs with AT2G40430Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.0797
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G60840 | PredictedAffinity Capture-MS | FSW = 0.0325
| Unknown | MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4) |
AT4G01370 | Predictedbiochemical | FSW = 0.0147
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT1G48830 | PredictedAffinity Capture-MS | FSW = 0.0375
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7A) |
AT1G06380 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0868
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT5G56030 | PredictedAffinity Capture-MS | FSW = 0.0181
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT4G38740 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G16600 | PredictedAffinity Capture-MS | FSW = 0.0231
| Unknown | ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0136
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G13210 | Predictedtwo hybrid | FSW = 0.0082
| Unknown | ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING |
AT5G12480 | Predictedbiochemical | FSW = 0.0040
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0679
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT1G63810 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0978
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT5G04600 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1596
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G10300 | PredictedAffinity Capture-MS | FSW = 0.1209
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT3G58660 | PredictedAffinity Capture-MS | FSW = 0.1250
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT3G57150 | PredictedAffinity Capture-MS | FSW = 0.1008
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT5G55920 | PredictedAffinity Capture-MS | FSW = 0.1004
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G07050 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1745
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT3G62310 | PredictedAffinity Capture-MS | FSW = 0.1143
| Unknown | RNA HELICASE PUTATIVE |
AT4G25340 | PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT1G14690 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7) |
AT5G41150 | PredictedAffinity Capture-MS | FSW = 0.0051
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT1G50920 | PredictedAffinity Capture-MS | FSW = 0.1508
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT3G22660 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1796
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT1G61580 | Predictedco-fractionationCo-fractionation | FSW = 0.1140
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G13160 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1189
| Unknown | SDA1 FAMILY PROTEIN |
AT1G42440 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0681
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
AT1G59760 | PredictedAffinity Capture-MS | FSW = 0.0506
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
AT2G37840 | Predictedbiochemical | FSW = 0.0116
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G01090 | Predictedbiochemical | FSW = 0.0194
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G01160 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0375
| Unknown | UNKNOWN PROTEIN |
AT4G15770 | Predictedtwo hybridCo-expression | FSW = 0.1110
| Unknown | RNA BINDING / PROTEIN BINDING |
AT5G06160 | Predictedtwo hybridCo-expression | FSW = 0.0056
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G22110 | PredictedAffinity Capture-MS | FSW = 0.1113
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
AT5G27990 | PredictedAffinity Capture-MS | FSW = 0.0901
| Unknown | UNKNOWN PROTEIN |
AT5G53770 | PredictedAffinity Capture-MS | FSW = 0.0344
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454