Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G40430 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Tumor suppressor protein Gltscr2 (InterProIPR011211) P60-like (InterProIPR011687) Has 601 Blast hits to 544 proteins in 148 species Archae - 0 Bacteria - 22 Metazoa - 201 Fungi - 103 Plants - 32 Viruses - 0 Other Eukaryotes - 243 (source NCBI BLink) )

37 Proteins interacs with AT2G40430
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G07770

Predicted

Affinity Capture-MS

FSW = 0.0797

Unknown

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G60840

Predicted

Affinity Capture-MS

FSW = 0.0325

Unknown

MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4)
AT4G01370

Predicted

biochemical

FSW = 0.0147

Unknown

ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT1G48830

Predicted

Affinity Capture-MS

FSW = 0.0375

Unknown

40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT1G06380

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0868

Unknown

RIBOSOMAL PROTEIN-RELATED
AT5G56030

Predicted

Affinity Capture-MS

FSW = 0.0181

Unknown

HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT4G38740

Predicted

Affinity Capture-MS

FSW = 0.0272

Unknown

ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G16600

Predicted

Affinity Capture-MS

FSW = 0.0231

Unknown

ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G52640

Predicted

Affinity Capture-MS

FSW = 0.0136

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G13210

Predicted

two hybrid

FSW = 0.0082

Unknown

ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING
AT5G12480

Predicted

biochemical

FSW = 0.0040

Unknown

CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G16830

Predicted

Affinity Capture-MS

FSW = 0.0679

Unknown

NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT1G63810

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0978

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT5G04600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1596

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G10300Predicted

Affinity Capture-MS

FSW = 0.1209

Unknown

GTP-BINDING PROTEIN-RELATED
AT3G58660

Predicted

Affinity Capture-MS

FSW = 0.1250

Unknown

60S RIBOSOMAL PROTEIN-RELATED
AT3G57150

Predicted

Affinity Capture-MS

FSW = 0.1008

Unknown

NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE
AT5G55920

Predicted

Affinity Capture-MS

FSW = 0.1004

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT3G07050

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1745

Unknown

GTP-BINDING FAMILY PROTEIN
AT3G62310

Predicted

Affinity Capture-MS

FSW = 0.1143

Unknown

RNA HELICASE PUTATIVE
AT4G25340

Predicted

Affinity Capture-MS

FSW = 0.0208

Unknown

IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT1G14690

Predicted

Affinity Capture-MS

FSW = 0.0351

Unknown

MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7)
AT5G41150

Predicted

Affinity Capture-MS

FSW = 0.0051

Unknown

UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT1G50920

Predicted

Affinity Capture-MS

FSW = 0.1508

Unknown

GTP-BINDING PROTEIN-RELATED
AT3G22660

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1796

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT1G61580

Predicted

co-fractionation

Co-fractionation

FSW = 0.1140

Unknown

RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G13160

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1189

Unknown

SDA1 FAMILY PROTEIN
AT1G42440

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0681

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G59760

Predicted

Affinity Capture-MS

FSW = 0.0506

Unknown

ATP-DEPENDENT RNA HELICASE PUTATIVE
AT2G37840

Predicted

biochemical

FSW = 0.0116

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G01090

Predicted

biochemical

FSW = 0.0194

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G01160

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0375

Unknown

UNKNOWN PROTEIN
AT4G15770

Predicted

two hybrid

Co-expression

FSW = 0.1110

Unknown

RNA BINDING / PROTEIN BINDING
AT5G06160

Predicted

two hybrid

Co-expression

FSW = 0.0056

Unknown

ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G22110

Predicted

Affinity Capture-MS

FSW = 0.1113

Unknown

ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING
AT5G27990

Predicted

Affinity Capture-MS

FSW = 0.0901

Unknown

UNKNOWN PROTEIN
AT5G53770

Predicted

Affinity Capture-MS

FSW = 0.0344

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454