Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G16600 - ( ROC3 peptidyl-prolyl cis-trans isomerase )
34 Proteins interacs with AT2G16600Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G34870 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4233
| Class C:plasma membraneperoxisomecytosol | ROC5 (ROTAMASE CYCLOPHILIN 5) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT4G38740 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6222
| Class C:plasma membraneperoxisomecytosol | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G38730 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3704
| Class C:plasma membrane | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE / CYCLOPHILIN PUTATIVE / ROTAMASE PUTATIVE |
AT1G66410 | PredictedAffinity Capture-MSAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0048
| Class C:plasma membrane | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT2G18040 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0278
| Class C:plasma membrane | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G21130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3865
| Class C:plasma membrane | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE / CYCLOPHILIN (CYP2) / ROTAMASE |
AT5G58710 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4233
| Class C:plasma membrane | ROC7 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT4G29210 | PredictedAffinity Capture-MS | FSW = 0.0243
| Unknown | GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
AT1G12520 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT3G49830 | PredictedAffinity Capture-MS | FSW = 0.0085
| Unknown | DNA HELICASE-RELATED |
AT1G17745 | Predictedtwo hybrid | FSW = 0.0179
| Unknown | PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE |
AT2G18510 | PredictedAffinity Capture-MS | FSW = 0.0455
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G06010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0211
| Unknown | ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G21700 | PredictedAffinity Capture-MS | FSW = 0.0057
| Unknown | SGP2 GTP BINDING |
AT4G38130 | PredictedAffinity Capture-Western | FSW = 0.0102
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT2G29960 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3865
| Unknown | CYP5 (CYCLOPHILIN 5) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT4G26840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0137
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT3G05210 | PredictedAffinity Capture-MS | FSW = 0.0432
| Unknown | ERCC1 5-FLAP ENDONUCLEASE |
AT5G67320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic Rescue | FSW = 0.0763
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT5G09230 | PredictedAffinity Capture-MS | FSW = 0.0901
| Unknown | SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT3G59630 | PredictedAffinity Capture-MS | FSW = 0.0595
| Unknown | DIPHTHAMIDE SYNTHESIS DPH2 FAMILY PROTEIN |
AT2G40430 | PredictedAffinity Capture-MS | FSW = 0.0231
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
AT5G01720 | PredictedAffinity Capture-MS | FSW = 0.0444
| Unknown | F-BOX FAMILY PROTEIN (FBL3) |
AT3G47120 | PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G36930 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT1G54290 | PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G19110 | Predictedinterologs mapping | FSW = 0.0228
| Unknown | PROTEIN KINASE PUTATIVE |
AT2G44150 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0392
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G22480 | PredictedSynthetic Lethality | FSW = 0.0387
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT1G29990 | PredictedSynthetic Lethality | FSW = 0.0217
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT5G22480 | PredictedSynthetic Lethality | FSW = 0.0215
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
AT3G56070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3758
| Unknown | ROC2 (ROTAMASE CYCLOPHILIN 2) CYCLOSPORIN A BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT1G01940 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3704
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
AT2G36130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4233
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE / CYCLOPHILIN PUTATIVE / ROTAMASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454