Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G38730 - ( peptidyl-prolyl cis-trans isomerase putative / cyclophilin putative / rotamase putative )

13 Proteins interacs with AT2G38730
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G34870

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7937

Class C:

plasma membrane

ROC5 (ROTAMASE CYCLOPHILIN 5) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G16600

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3704

Class C:

plasma membrane

ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT4G38740

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2688

Class C:

plasma membrane

ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G21130

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7246

Class C:

plasma membrane

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE / CYCLOPHILIN (CYP2) / ROTAMASE
AT5G58710

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7937

Class C:

plasma membrane

ROC7 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G41500

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0143

Unknown

EMB2776 NUCLEOTIDE BINDING
AT2G05720

Predicted

Affinity Capture-MS

FSW = 0.0909

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G29960

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7246

Unknown

CYP5 (CYCLOPHILIN 5) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT1G03140

Predicted

two hybrid

two hybrid

FSW = 0.0833

Unknown

SPLICING FACTOR PRP18 FAMILY PROTEIN
AT1G54590

Predicted

two hybrid

FSW = 0.2000

Unknown

SPLICING FACTOR PRP18 FAMILY PROTEIN
AT3G56070

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6173

Unknown

ROC2 (ROTAMASE CYCLOPHILIN 2) CYCLOSPORIN A BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G36130

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6882

Unknown

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE / CYCLOPHILIN PUTATIVE / ROTAMASE PUTATIVE
AT1G01940

Predicted

Phylogenetic profile method

FSW = 0.6944

Unknown

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454