Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G38730 - ( peptidyl-prolyl cis-trans isomerase putative / cyclophilin putative / rotamase putative )
13 Proteins interacs with AT2G38730Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G34870 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7937
| Class C:plasma membrane | ROC5 (ROTAMASE CYCLOPHILIN 5) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G16600 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3704
| Class C:plasma membrane | ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT4G38740 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2688
| Class C:plasma membrane | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G21130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7246
| Class C:plasma membrane | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE / CYCLOPHILIN (CYP2) / ROTAMASE |
AT5G58710 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7937
| Class C:plasma membrane | ROC7 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G41500 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0143
| Unknown | EMB2776 NUCLEOTIDE BINDING |
AT2G05720 | PredictedAffinity Capture-MS | FSW = 0.0909
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G29960 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.7246
| Unknown | CYP5 (CYCLOPHILIN 5) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT1G03140 | Predictedtwo hybridtwo hybrid | FSW = 0.0833
| Unknown | SPLICING FACTOR PRP18 FAMILY PROTEIN |
AT1G54590 | Predictedtwo hybrid | FSW = 0.2000
| Unknown | SPLICING FACTOR PRP18 FAMILY PROTEIN |
AT3G56070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6173
| Unknown | ROC2 (ROTAMASE CYCLOPHILIN 2) CYCLOSPORIN A BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G36130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6882
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE / CYCLOPHILIN PUTATIVE / ROTAMASE PUTATIVE |
AT1G01940 | PredictedPhylogenetic profile method | FSW = 0.6944
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454