Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G01720 - ( F-box family protein (FBL3) )
32 Proteins interacs with AT5G01720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G23810 | PredictedAffinity Capture-MS | FSW = 0.0833
| Unknown | SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2) ADENOSYLHOMOCYSTEINASE/ BINDING / CATALYTIC |
AT4G13940 | Predictedinteraction prediction | FSW = 0.0435
| Unknown | MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) ADENOSYLHOMOCYSTEINASE/ COPPER ION BINDING |
AT4G01370 | Predictedinteraction prediction | FSW = 0.0097
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT1G07790 | PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | HTB1 DNA BINDING |
AT2G16600 | PredictedAffinity Capture-MS | FSW = 0.0444
| Unknown | ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT4G38740 | Predictedinteraction prediction | FSW = 0.0462
| Unknown | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G48750 | Predictedinteraction prediction | FSW = 0.0076
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G20140 | Predictedtwo hybridtwo hybridtwo hybridReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerninterologs mappinginterologs mappingReconstituted Complextwo hybridEnriched domain pair | FSW = 0.0393
| Unknown | ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G31200 | Predictedinteraction prediction | FSW = 0.0384
| Unknown | ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) ACTIN BINDING |
AT5G20570 | Predictedinteraction prediction | FSW = 0.0790
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT3G42830 | Predictedtwo hybridAffinity Capture-WesternReconstituted ComplexSynthetic Lethality | FSW = 0.1026
| Unknown | RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE |
AT1G26830 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mappingReconstituted Complex | FSW = 0.0932
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G01750 | PredictedAffinity Capture-MS | FSW = 0.0294
| Unknown | ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) ACTIN BINDING |
AT3G07270 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0254
| Unknown | GTP CYCLOHYDROLASE I |
AT2G22480 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0598
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT4G05320 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0299
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT4G33070 | PredictedAffinity Capture-MS | FSW = 0.0279
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT4G06634 | Predictedinterologs mappinginterologs mapping | FSW = 0.0134
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT1G69670 | Predictedinterologs mappinginteraction prediction | FSW = 0.1678
| Unknown | CUL3B (CULLIN 3B) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G45000 | PredictedPhenotypic Suppression | FSW = 0.0270
| Unknown | EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE |
AT5G26680 | PredictedSynthetic Lethality | FSW = 0.0060
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G49510 | PredictedSynthetic Lethality | FSW = 0.0262
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT1G17720 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0497
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT2G18990 | PredictedSynthetic Rescue | FSW = 0.0714
| Unknown | TXND9 (THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 HOMOLOG) |
AT5G42190 | Predictedinteraction predictionEnriched domain pair | FSW = 0.0261
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G44150 | Predictedinteraction prediction | FSW = 0.0412
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G53650 | Predictedinteraction prediction | FSW = 0.0109
| Unknown | HISTONE H2B PUTATIVE |
AT5G01320 | Predictedinteraction prediction | FSW = 0.0618
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT3G21060 | Predictedinteraction prediction | FSW = 0.0321
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G49660 | Predictedinteraction prediction | FSW = 0.0234
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G46610 | PredictedGene fusion method | FSW = 0.0515
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G04840 | PredictedGene fusion method | FSW = 0.0627
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454