Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G33070 - ( pyruvate decarboxylase putative )
57 Proteins interacs with AT4G33070Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0256
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.1063
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G28710 | Predictedtwo hybrid | FSW = 0.0351
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT3G26590 | PredictedAffinity Capture-MS | FSW = 0.0138
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G07090 | PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT4G28390 | PredictedAffinity Capture-MS | FSW = 0.0467
| Unknown | AAC3 (ADP/ATP CARRIER 3) ATPADP ANTIPORTER/ BINDING |
AT3G08530 | PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.1184
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT3G19170 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.0713
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT3G56160 | PredictedAffinity Capture-MS | FSW = 0.0240
| Unknown | BILE ACIDSODIUM SYMPORTER |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.0778
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT1G02780 | PredictedAffinity Capture-MS | FSW = 0.0045
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.0968
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.1375
| Unknown | ZINC ION BINDING |
AT3G11730 | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
AT3G02080 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0190
| Unknown | 40S RIBOSOMAL PROTEIN S19 (RPS19A) |
AT3G46900 | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT1G76300 | PredictedAffinity Capture-MS | FSW = 0.0030
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT3G57150 | PredictedAffinity Capture-MS | FSW = 0.0066
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.0584
| Unknown | HISTONE H2B PUTATIVE |
AT5G35530 | PredictedAffinity Capture-MS | FSW = 0.0057
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3C) |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.0680
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT2G18230 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT2G05840 | PredictedAffinity Capture-RNA | FSW = 0.0260
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G06090 | Predictedinterologs mapping | FSW = 0.0099
| Unknown | FATTY ACID DESATURASE FAMILY PROTEIN |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.1054
| Unknown | UNKNOWN PROTEIN |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.0873
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G57550 | PredictedAffinity Capture-MS | FSW = 0.0479
| Unknown | AGK2 (GUANYLATE KINASE) GUANYLATE KINASE |
AT4G26230 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0428
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT1G47490 | PredictedAffinity Capture-MS | FSW = 0.0635
| Unknown | ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) RNA BINDING |
AT1G72340 | PredictedAffinity Capture-MS | FSW = 0.0169
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT2G27920 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) SERINE-TYPE CARBOXYPEPTIDASE |
AT2G29390 | PredictedAffinity Capture-MS | FSW = 0.0570
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT2G47760 | PredictedAffinity Capture-RNA | FSW = 0.0224
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT3G13060 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | ECT5 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S YT521-B-LIKE PROTEIN (INTERPROIPR007275) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ECT2 PROTEIN BINDING (TAIRAT3G134601) HAS 1007 BLAST HITS TO 965 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 8 METAZOA - 528 FUNGI - 103 PLANTS - 235 VIRUSES - 0 OTHER EUKARYOTES - 133 (SOURCE NCBI BLINK) |
AT3G16080 | PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.0167
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37C) |
AT4G04700 | Predictedinterologs mapping | FSW = 0.0135
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G21490 | PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | NDB3 NADH DEHYDROGENASE |
AT5G01640 | PredictedAffinity Capture-MS | FSW = 0.0369
| Unknown | PRA1B5 (PRENYLATED RAB ACCEPTOR 1B5) |
AT5G14180 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0065
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G48010 | PredictedAffinity Capture-MS | FSW = 0.0068
| Unknown | THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE |
AT5G02560 | PredictedAffinity Capture-MS | FSW = 0.0469
| Unknown | HTA12 DNA BINDING |
AT5G06150 | Predictedinterologs mapping | FSW = 0.0131
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.1271
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.0830
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G01720 | PredictedAffinity Capture-MS | FSW = 0.0279
| Unknown | F-BOX FAMILY PROTEIN (FBL3) |
AT2G29400 | PredictedAffinity Capture-MS | FSW = 0.0038
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G54290 | PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G26830 | PredictedAffinity Capture-MS | FSW = 0.0095
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G54960 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0776
| Unknown | PDC2 (PYRUVATE DECARBOXYLASE-2) CARBOXY-LYASE/ CATALYTIC/ MAGNESIUM ION BINDING / PYRUVATE DECARBOXYLASE/ THIAMIN PYROPHOSPHATE BINDING |
AT5G01320 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1212
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT5G01330 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0737
| Unknown | PDC3 (PYRUVATE DECARBOXYLASE-3) CARBOXY-LYASE/ CATALYTIC/ MAGNESIUM ION BINDING / PYRUVATE DECARBOXYLASE/ THIAMIN PYROPHOSPHATE BINDING / TRANSFERASE |
AT1G09680 | PredictedGene fusion method | FSW = 0.0340
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454