Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G54960 - ( PDC2 (pyruvate decarboxylase-2) carboxy-lyase/ catalytic/ magnesium ion binding / pyruvate decarboxylase/ thiamin pyrophosphate binding )
22 Proteins interacs with AT5G54960Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G02500 | PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING |
AT1G23190 | PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
AT1G77120 | PredictedShared biological functionCo-expression | FSW = 0.0426
| Unknown | ADH1 (ALCOHOL DEHYDROGENASE 1) ALCOHOL DEHYDROGENASE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0162
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G12900 | PredictedAffinity Capture-MS | FSW = 0.0301
| Unknown | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G06960 | PredictedAffinity Capture-MS | FSW = 0.0460
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT2G19980 | PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT1G50110 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 6 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 6 (BCAT6) |
AT1G17810 | PredictedAffinity Capture-MS | FSW = 0.0344
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT3G13900 | PredictedAffinity Capture-MS | FSW = 0.0344
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT1G02100 | PredictedAffinity Capture-MS | FSW = 0.0843
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G30220 | Predictedinterologs mappingsynthetic growth defect | FSW = 0.0641
| Unknown | INT2 (INOSITOL TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G70290 | Predictedbiochemical | FSW = 0.0204
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT2G37925 | PredictedAffinity Capture-MS | FSW = 0.0291
| Unknown | COPT4 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT3G57140 | PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | PATATIN-RELATED |
AT4G14000 | PredictedAffinity Capture-MS | FSW = 0.0395
| Unknown | UNKNOWN PROTEIN |
AT4G21490 | PredictedAffinity Capture-MS | FSW = 0.0397
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G30530 | PredictedAffinity Capture-MS | FSW = 0.1580
| Unknown | DEFENSE-RELATED PROTEIN PUTATIVE |
AT4G33070 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0776
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT5G01330 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1296
| Unknown | PDC3 (PYRUVATE DECARBOXYLASE-3) CARBOXY-LYASE/ CATALYTIC/ MAGNESIUM ION BINDING / PYRUVATE DECARBOXYLASE/ THIAMIN PYROPHOSPHATE BINDING / TRANSFERASE |
AT5G01320 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1232
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT1G09680 | PredictedGene fusion method | FSW = 0.0704
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454