Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G14000 - ( unknown protein )
55 Proteins interacs with AT4G14000Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G01100 | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING |
AT3G44300 | Predictedtwo hybridtwo hybrid | FSW = 0.0356
| Unknown | NIT2 (NITRILASE 2) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT3G08950 | PredictedSynthetic Lethality | FSW = 0.0031
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT1G30270 | Predictedtwo hybrid | FSW = 0.0115
| Unknown | CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT4G33650 | PredictedSynthetic Lethality | FSW = 0.0294
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT3G45770 | PredictedSynthetic Lethality | FSW = 0.0209
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT5G64270 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0032
| Unknown | SPLICING FACTOR PUTATIVE |
AT5G65430 | PredictedSynthetic Lethality | FSW = 0.0047
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G58610 | PredictedSynthetic Lethality | FSW = 0.0755
| Unknown | KETOL-ACID REDUCTOISOMERASE |
AT1G10070 | Predictedinterologs mappingbiochemicalSynthetic Lethalityinterologs mapping | FSW = 0.0424
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT3G09740 | PredictedAffinity Capture-MS | FSW = 0.0089
| Unknown | SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER |
AT4G34580 | PredictedSynthetic Lethality | FSW = 0.0071
| Unknown | COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT1G63110 | PredictedSynthetic Lethality | FSW = 0.0133
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT5G26340 | Predictedbiochemicalbiochemicalsynthetic growth defect | FSW = 0.0632
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G14350 | PredictedPhenotypic Enhancement | FSW = 0.0797
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G43900 | Predictedinterologs mapping | FSW = 0.0198
| Unknown | MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR |
AT1G21700 | PredictedSynthetic Lethality | FSW = 0.0671
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT1G06960 | Predictedtwo hybrid | FSW = 0.0743
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT1G62820 | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | CALMODULIN PUTATIVE |
AT3G33520 | PredictedSynthetic Lethality | FSW = 0.0106
| Unknown | ATARP6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G12840 | Predictedtwo hybrid | FSW = 0.0254
| Unknown | NF-YA1 (NUCLEAR FACTOR Y SUBUNIT A1) TRANSCRIPTION FACTOR |
AT3G14270 | PredictedSynthetic Lethality | FSW = 0.0482
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT2G47990 | Predictedsynthetic growth defect | FSW = 0.0440
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT4G39910 | PredictedAffinity Capture-MS | FSW = 0.0533
| Unknown | ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3) UBIQUITIN-SPECIFIC PROTEASE |
AT4G27070 | PredictedSynthetic Rescue | FSW = 0.0375
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT1G19730 | PredictedPhenotypic Enhancement | FSW = 0.0438
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G02100 | PredictedSynthetic Lethality | FSW = 0.0503
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G10210 | PredictedSynthetic Lethality | FSW = 0.0565
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G26690 | PredictedSynthetic Lethality | FSW = 0.0536
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G29965 | Predictedtwo hybrid | FSW = 0.0066
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
AT1G31170 | Predictedbiochemicalbiochemical | FSW = 0.0784
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G34580 | PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.0159
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G35350 | PredictedSynthetic Lethality | FSW = 0.0777
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G50370 | PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT1G66590 | Predictedtwo hybrid | FSW = 0.0790
| Unknown | COX19 FAMILY PROTEIN |
AT1G74810 | PredictedSynthetic Lethalitytwo hybridSynthetic Lethality | FSW = 0.1486
| Unknown | BOR5 ANION EXCHANGER |
AT1G79820 | PredictedAffinity Capture-MS | FSW = 0.0069
| Unknown | SGB1 (SUPPRESSOR OF G PROTEIN BETA1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G01070 | PredictedAffinity Capture-MS | FSW = 0.0110
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G724801) HAS 500 BLAST HITS TO 499 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 271 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 33 (SOURCE NCBI BLINK) |
AT2G29190 | PredictedSynthetic Lethality | FSW = 0.0103
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
AT2G34250 | PredictedSynthetic RescueSynthetic RescuebiochemicalSynthetic Rescue | FSW = 0.0608
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G44820 | PredictedSynthetic Lethality | FSW = 0.0482
| Unknown | UNKNOWN PROTEIN |
AT3G22290 | PredictedSynthetic Lethalityinterologs mapping | FSW = 0.0925
| Unknown | UNKNOWN PROTEIN |
AT3G26690 | PredictedAffinity Capture-MS | FSW = 0.0185
| Unknown | ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) BIS(5-ADENOSYL)-PENTAPHOSPHATASE/ HYDROLASE |
AT3G47300 | Predictedbiochemicalsynthetic growth defect | FSW = 0.1538
| Unknown | SELT (SELT-LIKE PROTEIN PRECURSOR) SELENIUM BINDING |
AT3G61740 | Predictedbiochemicalbiochemicalbiochemicalbiochemicalsynthetic growth defectAffinity Capture-Westerntwo hybrid | FSW = 0.0878
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G10480 | PredictedAffinity Capture-MS | FSW = 0.0497
| Unknown | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE |
AT1G26320 | PredictedSynthetic Lethality | FSW = 0.0158
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G55180 | PredictedbiochemicalReconstituted Complexbiochemical | FSW = 0.1296
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT4G29580 | PredictedPhenotypic Enhancement | FSW = 0.1176
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G01430 | PredictedSynthetic Lethality | FSW = 0.0193
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.1129
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G14180 | PredictedSynthetic Lethality | FSW = 0.0176
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G17860 | PredictedSynthetic Lethality | FSW = 0.1287
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
AT5G54960 | PredictedAffinity Capture-MS | FSW = 0.0395
| Unknown | PDC2 (PYRUVATE DECARBOXYLASE-2) CARBOXY-LYASE/ CATALYTIC/ MAGNESIUM ION BINDING / PYRUVATE DECARBOXYLASE/ THIAMIN PYROPHOSPHATE BINDING |
AT4G29020 | Predictedtwo hybrid | FSW = 0.0131
| Unknown | GLYCINE-RICH PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454