Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G50370 - ( serine/threonine protein phosphatase putative )
60 Proteins interacs with AT1G50370Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G42740 | PredictedAffinity Capture-MS | FSW = 0.0069
| Unknown | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G22630 | PredictedSynthetic Lethality | FSW = 0.0241
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G44300 | PredictedAffinity Capture-MS | FSW = 0.0672
| Unknown | NIT2 (NITRILASE 2) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0121
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G33040 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC) |
AT1G77590 | PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9) LONG-CHAIN-FATTY-ACID-COA LIGASE |
AT2G20800 | PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | NDB4 (NAD(P)H DEHYDROGENASE B4) NADH DEHYDROGENASE |
AT3G58500 | PredictedPhylogenetic profile method | FSW = 0.1029
| Unknown | PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G19980 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2813
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G09820 | PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT5G53460 | PredictedAffinity Capture-MS | FSW = 0.0379
| Unknown | GLT1 GLUTAMATE SYNTHASE (NADH) |
AT1G12900 | PredictedAffinity Capture-MS | FSW = 0.0122
| Unknown | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT4G35800 | PredictedSynthetic Lethality | FSW = 0.0363
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G02500 | PredictedAffinity Capture-MS | FSW = 0.0457
| Unknown | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
AT1G45000 | PredictedAffinity Capture-MSGene neighbors methodCo-expression | FSW = 0.0219
| Unknown | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT1G36160 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1201
| Unknown | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) ACETYL-COA CARBOXYLASE |
AT5G08570 | PredictedAffinity Capture-MS | FSW = 0.0144
| Unknown | PYRUVATE KINASE PUTATIVE |
AT1G20090 | PredictedSynthetic Lethality | FSW = 0.0145
| Unknown | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT1G04750 | Predictedinterologs mapping | FSW = 0.0183
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT1G22300 | PredictedAffinity Capture-MS | FSW = 0.0046
| Unknown | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G10430 | Predictedinterologs mappingPhylogenetic profile methodCo-expression | FSW = 0.1096
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G42500 | PredictedPhylogenetic profile method | FSW = 0.1120
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G20890 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0344
| Unknown | CHAPERONIN PUTATIVE |
AT1G59830 | PredictedPhylogenetic profile method | FSW = 0.1218
| Unknown | PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0283
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT4G26720 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0960
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G50670 | PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G28490 | Predictedbiochemical | FSW = 0.0478
| Unknown | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
AT1G11820 | PredictedAffinity Capture-MS | FSW = 0.0363
| Unknown | CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT3G05710 | Predictedbiochemical | FSW = 0.0256
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT3G02530 | PredictedAffinity Capture-MSinterologs mappingCo-expression | FSW = 0.0467
| Unknown | CHAPERONIN PUTATIVE |
AT4G39910 | PredictedPhenotypic Enhancement | FSW = 0.1253
| Unknown | ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3) UBIQUITIN-SPECIFIC PROTEASE |
AT3G23580 | PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | RNR2A (RIBONUCLEOTIDE REDUCTASE 2A) RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT4G17620 | PredictedAffinity Capture-MS | FSW = 0.0088
| Unknown | GLYCINE-RICH PROTEIN |
AT1G79750 | PredictedAffinity Capture-MS | FSW = 0.0311
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT4G21710 | PredictedSynthetic LethalityCo-expression | FSW = 0.0247
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G05180 | PredictedAffinity Capture-MS | FSW = 0.0065
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G69960 | PredictedPhylogenetic profile method | FSW = 0.2012
| Unknown | PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G47090 | PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G14000 | PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | UNKNOWN PROTEIN |
AT5G59490 | PredictedPhenotypic Enhancement | FSW = 0.0433
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT1G07990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0448
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT5G10270 | PredictedAffinity Capture-MS | FSW = 0.0442
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT4G30510 | PredictedAffinity Capture-MS | FSW = 0.0758
| Unknown | ATATG18B |
AT5G53000 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSinterologs mappingReconstituted Complex | FSW = 0.2012
| Unknown | TAP46 (2A PHOSPHATASE ASSOCIATED PROTEIN OF 46 KD) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT3G27000 | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT5G65860 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0492
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT4G18460 | PredictedAffinity Capture-MS | FSW = 0.0335
| Unknown | D-TYR-TRNA(TYR) DEACYLASE FAMILY PROTEIN |
AT1G71010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0379
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT4G08960 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0693
| Unknown | PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN |
AT5G13680 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0829
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT1G13870 | Predictedco-fractionationCo-fractionation | FSW = 0.0842
| Unknown | DRL1 (DEFORMED ROOTS AND LEAVES 1) CALMODULIN BINDING / PURINE NUCLEOTIDE BINDING |
AT1G09200 | Predictedinterologs mapping | FSW = 0.0170
| Unknown | HISTONE H3 |
AT1G10350 | Predictedinterologs mapping | FSW = 0.0108
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G35980 | Predictedinterologs mapping | FSW = 0.0234
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G14400 | PredictedSynthetic Lethality | FSW = 0.0378
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.0173
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT3G01090 | PredictedSynthetic Rescue | FSW = 0.0236
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT5G55260 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1408
| Unknown | PPX2 (PROTEIN PHOSPHATASE X 2) PROTEIN SERINE/THREONINE PHOSPHATASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454