Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G22300 - ( GRF10 (GENERAL REGULATORY FACTOR 10) ATP binding / protein binding / protein phosphorylated amino acid binding )
52 Proteins interacs with AT1G22300Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0741
| Class A:plasma membraneClass B:vacuoleperoxisomenucleuscytosolcytoskeletonClass D:cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G75080 | Experimentalinteraction detection methodtwo hybridAffinity Capture-Westernaffinity technologytwo hybrid | FSW = 0.1525
| Class D:plastid (p = 0.78) | BZR1 (BRASSINAZOLE-RESISTANT 1) DNA BINDING / TRANSCRIPTION REGULATOR/ TRANSCRIPTION REPRESSOR |
AT3G56190 | PredictedAffinity Capture-MS | FSW = 0.1555
| Class C:plasma membrane | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.1811
| Class C:plasma membrane | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G11260 | PredictedAffinity Capture-MS | FSW = 0.0330
| Class C:plasma membrane | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G10450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1437
| Class C:plasma membrane | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G09000 | PredictedPhylogenetic profile method | FSW = 0.3104
| Class C:plasma membrane | 14-3-3-LIKE PROTEIN GF14 CHI / GENERAL REGULATORY FACTOR 1 (GRF1) |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.2400
| Class C:plasma membrane | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G02520 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1045
| Class C:plasma membrane | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G42590 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1138
| Class C:plasma membrane | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G38480 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1443
| Class C:plasma membrane | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G35160 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1918
| Class C:plasma membrane | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G55810 | PredictedAffinity Capture-MS | FSW = 0.0313
| Class C:plasma membrane | PYRUVATE KINASE PUTATIVE |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.0371
| Class C:plasma membrane | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G50310 | PredictedAffinity Capture-MS | FSW = 0.1562
| Class C:plasma membrane | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.2531
| Class C:plasma membrane | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G22770 | PredictedAffinity Capture-MS | FSW = 0.0179
| Class C:plasma membrane | ALPHA-ADR (ALPHA-ADAPTIN) BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT5G16050 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3658
| Class C:plasma membrane | GRF5 (GENERAL REGULATORY FACTOR 5) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.1755
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.0970
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.2123
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT5G65430 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1856
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.1790
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT1G70580 | PredictedAffinity Capture-MS | FSW = 0.0467
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT3G13445 | PredictedAffinity Capture-MS | FSW = 0.0680
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G34065 | PredictedAffinity Capture-MS | FSW = 0.0641
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.0588
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT2G31970 | PredictedPhenotypic EnhancementAffinity Capture-MS | FSW = 0.0020
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.2192
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.2384
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.0774
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.2026
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT1G05650 | PredictedAffinity Capture-MS | FSW = 0.3158
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0416
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT3G58830 | Predictedsynthetic growth defect | FSW = 0.0112
| Unknown | HALOACID DEHALOGENASE (HAD) SUPERFAMILY PROTEIN |
AT5G09390 | PredictedAffinity Capture-MS | FSW = 0.2283
| Unknown | CD2-BINDING PROTEIN-RELATED |
AT1G34460 | PredictedAffinity Capture-MS | FSW = 0.0536
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.1272
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G50370 | PredictedAffinity Capture-MS | FSW = 0.0046
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.2082
| Unknown | UNKNOWN PROTEIN |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.1050
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G29390 | PredictedAffinity Capture-MS | FSW = 0.2539
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.2123
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G11900 | PredictedAffinity Capture-MS | FSW = 0.0829
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G53730 | PredictedAffinity Capture-MS | FSW = 0.0661
| Unknown | HISTONE H4 |
AT4G26810 | PredictedAffinity Capture-MS | FSW = 0.1134
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT4G35620 | PredictedAffinity Capture-MS | FSW = 0.0337
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G24670 | PredictedAffinity Capture-MS | FSW = 0.0653
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.0784
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT1G26480 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3753
| Unknown | GRF12 (GENERAL REGULATORY FACTOR 12) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G34760 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2845
| Unknown | GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G78220 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3793
| Unknown | GRF13 PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454