Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G43370 - ( APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ phosphate transmembrane transporter/ sugarhydrogen symporter )

86 Proteins interacs with AT5G43370
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G20450

Predicted

Affinity Capture-MS

FSW = 0.5187

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT2G38940

Predicted

Phylogenetic profile method

FSW = 0.1123

Class C:

plasma membrane

ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G56190

Predicted

Affinity Capture-MS

FSW = 0.5164

Class C:

plasma membrane

ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT1G22780

Predicted

Affinity Capture-MS

FSW = 0.6819

Class C:

plasma membrane

PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G10450

Predicted

Affinity Capture-MS

FSW = 0.0481

Class C:

plasma membrane

GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G15210

Predicted

Affinity Capture-MS

FSW = 0.7037

Class C:

plasma membrane

PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G08530

Predicted

Affinity Capture-MS

FSW = 0.0939

Class C:

plasma membrane

CLATHRIN HEAVY CHAIN PUTATIVE
AT5G60390

Predicted

Affinity Capture-MS

FSW = 0.4822

Class C:

plasma membrane

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G23740

Predicted

Affinity Capture-MS

FSW = 0.5764

Class C:

plasma membrane

RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G27970

Predicted

Affinity Capture-MS

FSW = 0.5155

Class C:

plasma membrane

NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT1G50310

Predicted

Affinity Capture-MS

FSW = 0.3665

Class C:

plasma membrane

STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G43350

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

FSW = 0.1772

Class C:

plasma membrane

PHT11 (PHOSPHATE TRANSPORTER 11) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G43360

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.1282

Class C:

plasma membrane

PHT3 (PHOSPHATE TRANSPORTER 3) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G02620

Predicted

Gene fusion method

FSW = 0.0362

Class C:

plasma membrane

ANKYRIN REPEAT FAMILY PROTEIN
AT1G13320

Predicted

Affinity Capture-MS

FSW = 0.2106

Class C:

plasma membrane

PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT1G22300

Predicted

Affinity Capture-MS

FSW = 0.2531

Class C:

plasma membrane

GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G62300

Predicted

Affinity Capture-MS

FSW = 0.3788

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT4G36860

Predicted

Affinity Capture-MS

FSW = 0.6976

Class C:

plasma membrane

ZINC ION BINDING
AT1G09640

Predicted

Affinity Capture-MS

FSW = 0.5316

Class C:

plasma membrane

ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE
AT4G32470

Predicted

Affinity Capture-MS

FSW = 0.7232

Unknown

UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT1G07930Predicted

Affinity Capture-MS

FSW = 0.6710

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT2G19860

Predicted

Affinity Capture-MS

FSW = 0.5660

Unknown

HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G08950

Predicted

Affinity Capture-MS

FSW = 0.6664

Unknown

ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN
AT3G19980

Predicted

Affinity Capture-MS

FSW = 0.5176

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G16950

Predicted

Affinity Capture-MS

FSW = 0.6041

Unknown

LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT5G65430

Predicted

Affinity Capture-MS

FSW = 0.1017

Unknown

GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G11630

Predicted

Affinity Capture-MS

FSW = 0.3383

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT3G44610

Predicted

Affinity Capture-MS

FSW = 0.2306

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G13050

Predicted

Affinity Capture-MS

FSW = 0.6535

Unknown

5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE
AT3G06040

Predicted

Affinity Capture-MS

FSW = 0.6440

Unknown

RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT2G35690

Predicted

Affinity Capture-MS

FSW = 0.5211

Unknown

ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS
AT4G00520

Predicted

Affinity Capture-MS

FSW = 0.0703

Unknown

ACYL-COA THIOESTERASE FAMILY PROTEIN
AT3G13445

Predicted

Affinity Capture-MS

FSW = 0.2041

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT5G59870

Predicted

Affinity Capture-MS

FSW = 0.6996

Unknown

HTA6 DNA BINDING
AT5G44500

Predicted

Affinity Capture-MS

FSW = 0.5155

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT2G37470

Predicted

Affinity Capture-MS

FSW = 0.4563

Unknown

HISTONE H2B PUTATIVE
AT3G20970

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0845

Unknown

NFU4 STRUCTURAL MOLECULE
AT4G04870

Predicted

Affinity Capture-MS

FSW = 0.0362

Unknown

CLS (CARDIOLIPIN SYNTHASE) CARDIOLIPIN SYNTHASE/ PHOSPHATIDYLTRANSFERASE
AT1G72480

Predicted

Affinity Capture-MS

FSW = 0.4702

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT2G13650

Predicted

Affinity Capture-MS

FSW = 0.6153

Unknown

GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT4G30990

Predicted

Affinity Capture-MS

FSW = 0.4712

Unknown

BINDING
AT5G41480

Predicted

Affinity Capture-MS

FSW = 0.5851

Unknown

GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT3G52580

Predicted

Affinity Capture-MS

FSW = 0.7293

Unknown

40S RIBOSOMAL PROTEIN S14 (RPS14C)
AT3G10660

Predicted

Affinity Capture-MS

FSW = 0.0586

Unknown

CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G24040

Predicted

Affinity Capture-MS

FSW = 0.7267

Unknown

HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT3G12530

Predicted

Affinity Capture-MS

FSW = 0.5156

Unknown

PSF2
AT5G47880

Predicted

Affinity Capture-MS

FSW = 0.6774

Unknown

ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR
AT1G62880

Predicted

Affinity Capture-MS

FSW = 0.6698

Unknown

CORNICHON FAMILY PROTEIN
AT2G29390

Predicted

Affinity Capture-MS

FSW = 0.5201

Unknown

SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE
AT2G46860

Predicted

Affinity Capture-MS

FSW = 0.5931

Unknown

ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT3G62770

Predicted

Affinity Capture-MS

FSW = 0.4509

Unknown

ATATG18A
AT4G39330

Predicted

Affinity Capture-MS

FSW = 0.5600

Unknown

CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G19820

Predicted

Affinity Capture-MS

FSW = 0.4088

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT1G05650

Predicted

Affinity Capture-MS

FSW = 0.4622

Unknown

POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE
AT1G11530

Predicted

Affinity Capture-MS

FSW = 0.5839

Unknown

ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE
AT1G20696

Predicted

Affinity Capture-MS

FSW = 0.5571

Unknown

HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G33110

Predicted

Affinity Capture-MS

FSW = 0.6564

Unknown

MATE EFFLUX FAMILY PROTEIN
AT1G34580

Predicted

Affinity Capture-MS

FSW = 0.1644

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G51770

Predicted

Affinity Capture-MS

FSW = 0.6536

Unknown

UNKNOWN PROTEIN
AT1G64480

Predicted

Affinity Capture-MS

FSW = 0.6161

Unknown

CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING
AT1G71280

Predicted

Affinity Capture-MS

FSW = 0.6317

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G76720

Predicted

Affinity Capture-MS

FSW = 0.7166

Unknown

GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT2G03667

Predicted

Affinity Capture-MS

FSW = 0.4864

Unknown

ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING)
AT3G05960

Predicted

Affinity Capture-MS

FSW = 0.4120

Unknown

STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G12690

Predicted

Affinity Capture-MS

FSW = 0.6741

Unknown

AGC15 (AGC KINASE 15) KINASE
AT3G19940

Predicted

Affinity Capture-MS

FSW = 0.5269

Unknown

SUGAR TRANSPORTER PUTATIVE
AT3G20650

Predicted

Affinity Capture-MS

FSW = 0.4093

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G23570

Predicted

Affinity Capture-MS

FSW = 0.4527

Unknown

DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G30842

Predicted

Affinity Capture-MS

FSW = 0.4716

Unknown

PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G52390

Predicted

Affinity Capture-MS

FSW = 0.5765

Unknown

TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN
AT3G53510

Predicted

Affinity Capture-MS

FSW = 0.3654

Unknown

ABC TRANSPORTER FAMILY PROTEIN
AT4G11330

Predicted

Affinity Capture-MS

FSW = 0.0262

Unknown

ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT4G17770

Predicted

Affinity Capture-MS

FSW = 0.7483

Unknown

ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT4G26230

Predicted

Affinity Capture-MS

FSW = 0.3746

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT5G09390

Predicted

Affinity Capture-MS

FSW = 0.5071

Unknown

CD2-BINDING PROTEIN-RELATED
AT5G09630

Predicted

Affinity Capture-MS

FSW = 0.6083

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT5G19660

Predicted

Affinity Capture-MS

FSW = 0.6127

Unknown

S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE
AT5G41190

Predicted

Affinity Capture-MS

FSW = 0.5606

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G46150

Predicted

Affinity Capture-MS

FSW = 0.2230

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G54200

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3324

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT5G57890

Predicted

Affinity Capture-MS

FSW = 0.2065

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT2G32830

Predicted

Phylogenetic profile method

FSW = 0.1123

Unknown

PHT5 INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT1G20860

Predicted

Phylogenetic profile method

FSW = 0.0998

Unknown

PHOSPHATE TRANSPORTER FAMILY PROTEIN
AT5G43340

Predicted

Phylogenetic profile method

FSW = 0.0912

Unknown

PHT6 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G76430

Predicted

Phylogenetic profile method

FSW = 0.1269

Unknown

PHOSPHATE TRANSPORTER FAMILY PROTEIN
AT1G05030

Predicted

Gene fusion method

FSW = 0.0549

Unknown

HEXOSE TRANSPORTER PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454