Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G43370 - ( APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) carbohydrate transmembrane transporter/ inorganic phosphate transmembrane transporter/ phosphate transmembrane transporter/ sugarhydrogen symporter )
86 Proteins interacs with AT5G43370Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.5187
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT2G38940 | PredictedPhylogenetic profile method | FSW = 0.1123
| Class C:plasma membrane | ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G56190 | PredictedAffinity Capture-MS | FSW = 0.5164
| Class C:plasma membrane | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.6819
| Class C:plasma membrane | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G10450 | PredictedAffinity Capture-MS | FSW = 0.0481
| Class C:plasma membrane | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.7037
| Class C:plasma membrane | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G08530 | PredictedAffinity Capture-MS | FSW = 0.0939
| Class C:plasma membrane | CLATHRIN HEAVY CHAIN PUTATIVE |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.4822
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G23740 | PredictedAffinity Capture-MS | FSW = 0.5764
| Class C:plasma membrane | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.5155
| Class C:plasma membrane | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT1G50310 | PredictedAffinity Capture-MS | FSW = 0.3665
| Class C:plasma membrane | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G43350 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.1772
| Class C:plasma membrane | PHT11 (PHOSPHATE TRANSPORTER 11) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G43360 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1282
| Class C:plasma membrane | PHT3 (PHOSPHATE TRANSPORTER 3) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G02620 | PredictedGene fusion method | FSW = 0.0362
| Class C:plasma membrane | ANKYRIN REPEAT FAMILY PROTEIN |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.2106
| Class C:plasma membrane | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G22300 | PredictedAffinity Capture-MS | FSW = 0.2531
| Class C:plasma membrane | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.3788
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.6976
| Class C:plasma membrane | ZINC ION BINDING |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.5316
| Class C:plasma membrane | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.7232
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.6710
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.5660
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.6664
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.5176
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.6041
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.1017
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.3383
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.2306
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.6535
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT3G06040 | PredictedAffinity Capture-MS | FSW = 0.6440
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.5211
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT4G00520 | PredictedAffinity Capture-MS | FSW = 0.0703
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT3G13445 | PredictedAffinity Capture-MS | FSW = 0.2041
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.6996
| Unknown | HTA6 DNA BINDING |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.5155
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.4563
| Unknown | HISTONE H2B PUTATIVE |
AT3G20970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0845
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT4G04870 | PredictedAffinity Capture-MS | FSW = 0.0362
| Unknown | CLS (CARDIOLIPIN SYNTHASE) CARDIOLIPIN SYNTHASE/ PHOSPHATIDYLTRANSFERASE |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.4702
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.6153
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.4712
| Unknown | BINDING |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.5851
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.7293
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT3G10660 | PredictedAffinity Capture-MS | FSW = 0.0586
| Unknown | CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.7267
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.5156
| Unknown | PSF2 |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.6774
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.6698
| Unknown | CORNICHON FAMILY PROTEIN |
AT2G29390 | PredictedAffinity Capture-MS | FSW = 0.5201
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.5931
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.4509
| Unknown | ATATG18A |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.5600
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.4088
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT1G05650 | PredictedAffinity Capture-MS | FSW = 0.4622
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.5839
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.5571
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G33110 | PredictedAffinity Capture-MS | FSW = 0.6564
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.1644
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.6536
| Unknown | UNKNOWN PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.6161
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.6317
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G76720 | PredictedAffinity Capture-MS | FSW = 0.7166
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.4864
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.4120
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.6741
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.5269
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.4093
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.4527
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.4716
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.5765
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G53510 | PredictedAffinity Capture-MS | FSW = 0.3654
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT4G11330 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.7483
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.3746
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT5G09390 | PredictedAffinity Capture-MS | FSW = 0.5071
| Unknown | CD2-BINDING PROTEIN-RELATED |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.6083
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.6127
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.5606
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G46150 | PredictedAffinity Capture-MS | FSW = 0.2230
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G54200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3324
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.2065
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT2G32830 | PredictedPhylogenetic profile method | FSW = 0.1123
| Unknown | PHT5 INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT1G20860 | PredictedPhylogenetic profile method | FSW = 0.0998
| Unknown | PHOSPHATE TRANSPORTER FAMILY PROTEIN |
AT5G43340 | PredictedPhylogenetic profile method | FSW = 0.0912
| Unknown | PHT6 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G76430 | PredictedPhylogenetic profile method | FSW = 0.1269
| Unknown | PHOSPHATE TRANSPORTER FAMILY PROTEIN |
AT1G05030 | PredictedGene fusion method | FSW = 0.0549
| Unknown | HEXOSE TRANSPORTER PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454