Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G41480 - ( GLA1 (GLOBULAR ARREST1) dihydrofolate synthase )
103 Proteins interacs with AT5G41480Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.6288
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT3G56190 | PredictedAffinity Capture-MS | FSW = 0.3948
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.5224
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G62150 | PredictedAffinity Capture-MS | FSW = 0.2328
| Unknown | PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0633
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.5891
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G26590 | Predictedbiochemical | FSW = 0.0108
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2248
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.5390
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.6338
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.4659
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.5976
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.5950
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT2G06850 | PredictedAffinity Capture-MS | FSW = 0.0187
| Unknown | EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) HYDROLASE ACTING ON GLYCOSYL BONDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT2G01350 | PredictedAffinity Capture-MS | FSW = 0.0948
| Unknown | QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) NICOTINATE-NUCLEOTIDE DIPHOSPHORYLASE (CARBOXYLATING) |
AT3G19160 | PredictedAffinity Capture-MS | FSW = 0.1254
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.3212
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.5849
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.3859
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT3G06040 | PredictedAffinity Capture-MS | FSW = 0.5278
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT5G63110 | Predictedinterologs mapping | FSW = 0.0031
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.3973
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G45420 | PredictedAffinity Capture-MS | FSW = 0.5859
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT5G23740 | PredictedAffinity Capture-MS | FSW = 0.4882
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G47370 | PredictedAffinity Capture-MSbiochemical | FSW = 0.0889
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.4824
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT3G13560 | PredictedAffinity Capture-MS | FSW = 0.1295
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT1G75370 | PredictedAffinity Capture-MS | FSW = 0.0259
| Unknown | SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHATIDYLINOSITOL TRANSFER-LIKE PROTEIN PUTATIVE |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.5851
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G13320 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2061
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.4317
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.4695
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT5G12350 | PredictedAffinity Capture-MS | FSW = 0.1219
| Unknown | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT4G36860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5848
| Unknown | ZINC ION BINDING |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.4195
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.4501
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT3G13445 | PredictedAffinity Capture-MS | FSW = 0.1351
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.5133
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.5591
| Unknown | HTA6 DNA BINDING |
AT1G72560 | PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.4369
| Unknown | HISTONE H2B PUTATIVE |
AT3G20970 | PredictedAffinity Capture-MS | FSW = 0.1365
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT1G34065 | PredictedAffinity Capture-MS | FSW = 0.1566
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.5417
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.5196
| Unknown | BINDING |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.0369
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.6141
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT2G42120 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.5532
| Unknown | PSF2 |
AT2G29540 | PredictedAffinity Capture-MS | FSW = 0.0342
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.1517
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.6398
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.2136
| Unknown | UNKNOWN PROTEIN |
AT2G29390 | PredictedAffinity Capture-MS | FSW = 0.4738
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.5133
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G22590 | PredictedAffinity Capture-MS | FSW = 0.0059
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.4228
| Unknown | ATATG18A |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.5849
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.4379
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT1G05785 | PredictedAffinity Capture-MS | FSW = 0.1471
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.5062
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G14310 | Predictedco-fractionationCo-fractionation | FSW = 0.1344
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.4972
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.0460
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.6101
| Unknown | UNKNOWN PROTEIN |
AT1G53900 | PredictedAffinity Capture-MS | FSW = 0.1770
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.4096
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.5905
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.5868
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.5135
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G76720 | PredictedAffinity Capture-MS | FSW = 0.5520
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.4434
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.2501
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0453
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G20410 | Predictedtwo hybrid | FSW = 0.0049
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.4163
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0989
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.1780
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G05540 | PredictedAffinity Capture-MS | FSW = 0.3092
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK) |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.4472
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0943
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.5583
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0464
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.4510
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.3855
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.5814
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.4639
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.6024
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G53510 | PredictedAffinity Capture-MS | FSW = 0.3513
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT3G53880 | PredictedCo-purification | FSW = 0.0831
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G57550 | PredictedAffinity Capture-MS | FSW = 0.2115
| Unknown | AGK2 (GUANYLATE KINASE) GUANYLATE KINASE |
AT4G14240 | Predictedbiochemical | FSW = 0.0071
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT4G16440 | PredictedAffinity Capture-MS | FSW = 0.0545
| Unknown | FERREDOXIN HYDROGENASE |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.5468
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.4217
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT5G02560 | PredictedAffinity Capture-MS | FSW = 0.0794
| Unknown | HTA12 DNA BINDING |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.5428
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G23290 | PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.5819
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G46150 | PredictedAffinity Capture-MS | FSW = 0.2360
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G48710 | PredictedAffinity Capture-MS | FSW = 0.0672
| Unknown | UBIQUITIN-RELATED |
AT5G54200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3266
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1719
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454