Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G03667 - ( asparagine synthase (glutamine-hydrolyzing) )
66 Proteins interacs with AT2G03667Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.4803
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT4G19640 | Predictedsynthetic growth defect | FSW = 0.0060
| Unknown | ARA7 GTP BINDING |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.4333
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT3G08710 | PredictedAffinity Capture-MS | FSW = 0.1277
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.4811
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.4902
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G62870 | PredictedSynthetic Lethality | FSW = 0.0356
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G20020 | PredictedAffinity Capture-MS | FSW = 0.0368
| Unknown | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.5479
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.4522
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.3634
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.5092
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.4480
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.2813
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.1139
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.3726
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G45420 | PredictedAffinity Capture-MS | FSW = 0.4319
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT1G75840 | PredictedAffinity Capture-MS | FSW = 0.1088
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.4981
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G14120 | PredictedAffinity Capture-MS | FSW = 0.0988
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT2G21540 | PredictedAffinity Capture-MS | FSW = 0.1646
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.3940
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.4864
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.2112
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT3G57530 | Predictedbiochemical | FSW = 0.0061
| Unknown | CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) CALCIUM-DEPENDENT PROTEIN KINASE C/ CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT1G63110 | Predictedtwo hybrid | FSW = 0.0192
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT4G36860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.6160
| Unknown | ZINC ION BINDING |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.4863
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.0735
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.5340
| Unknown | HTA6 DNA BINDING |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.1399
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.5104
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G25780 | PredictedAffinity Capture-MS | FSW = 0.1814
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G79250 | Predictedbiochemical | FSW = 0.0286
| Unknown | AGC17 (AGC KINASE 17) KINASE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.2434
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.4574
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.4434
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.5306
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.3641
| Unknown | PSF2 |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.4864
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.5345
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0935
| Unknown | UNKNOWN PROTEIN |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.1359
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.5061
| Unknown | UNKNOWN PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.5452
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.4366
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.3123
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.2643
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.4208
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0344
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.4908
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.4714
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.4711
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G44590 | PredictedAffinity Capture-MS | FSW = 0.0757
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D) |
AT3G57550 | PredictedAffinity Capture-MS | FSW = 0.2164
| Unknown | AGK2 (GUANYLATE KINASE) GUANYLATE KINASE |
AT3G63280 | PredictedAffinity Capture-MS | FSW = 0.0946
| Unknown | ATNEK4 (NIMA-RELATED KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G14670 | PredictedAffinity Capture-MS | FSW = 0.0375
| Unknown | CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.5422
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.4903
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.3771
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G46150 | PredictedAffinity Capture-MS | FSW = 0.1795
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT2G42160 | PredictedAffinity Capture-MS | FSW = 0.3816
| Unknown | ZINC FINGER (UBIQUITIN-HYDROLASE) DOMAIN-CONTAINING PROTEIN |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.4731
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.5414
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.4104
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.3509
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454