Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G20020 - ( RAN2 GTP binding / GTPase/ protein binding )

64 Proteins interacs with AT5G20020
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G55340

Experimental

Protein-RNA

two hybrid

FSW = 0.0142

Class A:

nucleus

Class B:

unclear

Class D:

plastid (p = 0.78)

 PHIP1 (PHRAGMOPLASTIN INTERACTING PROTEIN 1) RNA BINDING / MRNA BINDING
AT5G58590

Experimental

two hybrid

FSW = 0.2359

Class A:

nucleus

Class B:

unclear

Class D:

cytosol (p = 0.67)

 RANBP1 (RAN BINDING PROTEIN 1) PROTEIN BINDING
AT2G30060

Experimental

two hybrid

FSW = 0.1159

Unknown

 RAN-BINDING PROTEIN 1B (RANBP1B)
AT1G07140

Experimental

two hybrid

FSW = 0.1461

Unknown

 SIRANBP RAN GTPASE BINDING
AT4G14960

Predicted

two hybrid

FSW = 0.0267

Class C:

unclear

nucleus

 TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G22440

Predicted

two hybrid

FSW = 0.0027

Class C:

unclear

nucleus

 60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT3G16480

Predicted

Affinity Capture-MS

FSW = 0.0322

Class C:

unclear

 MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING
AT4G32470

Predicted

Affinity Capture-MS

FSW = 0.0686

Class C:

unclear

 UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT5G19320

Predicted

in vitro

in vitro

in vitro

Affinity Capture-MS

Phenotypic Suppression

FSW = 0.0495

Class C:

nucleus

 RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR
AT3G63130

Predicted

Phenotypic Suppression

Phenotypic Suppression

Enriched domain pair

FSW = 0.0605

Class C:

nucleus

 RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) RAN GTPASE ACTIVATOR/ PROTEIN BINDING
AT5G20010

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

FSW = 0.1025

Class C:

nucleus

 RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G23740

Predicted

two hybrid

FSW = 0.0385

Class C:

nucleus

 RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G27970

Predicted

two hybrid

two hybrid

two hybrid

two hybrid

in vivo

in vivo

in vivo

in vivo

in vivo

in vitro

in vitro

in vitro

in vitro

in vitro

Affinity Capture-MS

two hybrid

Enriched domain pair

FSW = 0.0624

Class C:

nucleus

 NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT3G17590

Predicted

Reconstituted Complex

FSW = 0.0161

Class C:

nucleus

 BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT5G27720

Predicted

Affinity Capture-MS

FSW = 0.0073

Class C:

nucleus

 EMB1644 (EMBRYO DEFECTIVE 1644)
AT1G11570

Predicted

two hybrid

two hybrid

two hybrid

two hybrid

in vitro

in vitro

in vitro

in vitro

in vitro

in vivo

in vivo

in vivo

in vivo

in vivo

Affinity Capture-MS

two hybrid

Reconstituted Complex

FSW = 0.0441

Class C:

nucleus

 NUCLEAR TRANSPORT FACTOR 2 (NTF2) PUTATIVE
AT5G17020

Predicted

Affinity Capture-Western

in vitro

FSW = 0.1095

Class C:

nucleus

 XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR
AT1G72560

Predicted

in vitro

in vitro

FSW = 0.0190

Class C:

nucleus

 PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING
AT2G20450

Predicted

Affinity Capture-MS

FSW = 0.0580

Unknown

 60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT5G47520

Predicted

Gene fusion method

FSW = 0.0304

Unknown

 ATRABA5A (ARABIDOPSIS RAB GTPASE HOMOLOG A5A) GTP BINDING
AT2G43070

Predicted

two hybrid

FSW = 0.0588

Unknown

 PROTEASE-ASSOCIATED (PA) DOMAIN-CONTAINING PROTEIN
AT3G15000

Predicted

two hybrid

FSW = 0.0171

Unknown

 LOCATED IN MITOCHONDRION EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PLASTID DEVELOPMENTAL PROTEIN DAG PUTATIVE (TAIRAT3G067902) HAS 50779 BLAST HITS TO 24732 PROTEINS IN 941 SPECIES ARCHAE - 10 BACTERIA - 4862 METAZOA - 25623 FUNGI - 7071 PLANTS - 6957 VIRUSES - 900 OTHER EUKARYOTES - 5356 (SOURCE NCBI BLINK)
AT5G53480

Predicted

in vitro

in vitro

Enriched domain pair

FSW = 0.0360

Unknown

 IMPORTIN BETA-2 PUTATIVE
AT3G11630

Predicted

Affinity Capture-MS

FSW = 0.0284

Unknown

 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT3G04770

Predicted

two hybrid

FSW = 0.0280

Unknown

 RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G08450

Predicted

two hybrid

FSW = 0.0159

Unknown

 CRT3 (CALRETICULIN 3) CALCIUM ION BINDING / UNFOLDED PROTEIN BINDING
AT4G26390

Predicted

two hybrid

FSW = 0.0265

Unknown

 PYRUVATE KINASE PUTATIVE
AT5G56350

Predicted

two hybrid

two hybrid

FSW = 0.0118

Unknown

 PYRUVATE KINASE PUTATIVE
AT1G04750

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0047

Unknown

 VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT1G50310

Predicted

Affinity Capture-MS

FSW = 0.0239

Unknown

 STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G47200

Predicted

two hybrid

FSW = 0.0096

Unknown

 ATRAB1A GTP BINDING
AT3G61530

Predicted

Affinity Capture-MS

FSW = 0.0265

Unknown

 PANB2 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
AT2G46520

Predicted

in vitro

Enriched domain pair

FSW = 0.0386

Unknown

 CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN PUTATIVE / IMPORTIN-ALPHA RE-EXPORTER PUTATIVE
AT3G28730

Predicted

in vivo

in vitro

Affinity Capture-MS

FSW = 0.0103

Unknown

 ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT4G21160

Predicted

in vivo

FSW = 0.0159

Unknown

 ZAC ARF GTPASE ACTIVATOR/ PHOSPHOLIPID BINDING
AT2G26780

Predicted

two hybrid

FSW = 0.0882

Unknown

 BINDING
AT3G57490

Predicted

two hybrid

FSW = 0.0265

Unknown

 40S RIBOSOMAL PROTEIN S2 (RPS2D)
AT4G34540

Predicted

two hybrid

FSW = 0.0043

Unknown

 ISOFLAVONE REDUCTASE FAMILY PROTEIN
AT5G12410

Predicted

two hybrid

FSW = 0.0178

Unknown

 THUMP DOMAIN-CONTAINING PROTEIN
AT5G49570

Predicted

two hybrid

FSW = 0.0148

Unknown

 ATPNG1 (ARABIDOPSIS THALIANA PEPTIDE-N-GLYCANASE 1) CATALYTIC/ PEPTIDE-N4-(N-ACETYL-BETA-GLUCOSAMINYL)ASPARAGINE AMIDASE
AT3G02570

Predicted

two hybrid

FSW = 0.0159

Unknown

 MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) MANNOSE-6-PHOSPHATE ISOMERASE
AT2G16950

Predicted

two hybrid

in vitro

FSW = 0.0347

Unknown

 TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT3G07370

Predicted

two hybrid

FSW = 0.0196

Unknown

 CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) UBIQUITIN-PROTEIN LIGASE
AT5G41940

Predicted

two hybrid

FSW = 0.0142

Unknown

 RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT1G69680

Predicted

in vitro

two hybrid

Affinity Capture-MS

FSW = 0.0922

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MOG1/PSBP/DUF1795 ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016124) RAN-INTERACTING MOG1 PROTEIN (INTERPROIPR007681) MOG1/PSBP ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016123) HAS 202 BLAST HITS TO 202 PROTEINS IN 100 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 55 FUNGI - 83 PLANTS - 25 VIRUSES - 0 OTHER EUKARYOTES - 39 (SOURCE NCBI BLINK)
AT3G08960Predicted

in vivo

Affinity Capture-MS

FSW = 0.0331

Unknown

 BINDING / PROTEIN TRANSPORTER
AT3G15970

Predicted

Affinity Capture-MS

in vitro

in vivo

FSW = 0.1209

Unknown

 RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN
AT3G59020

Predicted

in vitro

FSW = 0.0420

Unknown

 BINDING / PROTEIN TRANSPORTER
AT4G09200Predicted

in vitro

in vivo

in vivo

in vitro

FSW = 0.0149

Unknown

 SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN
AT4G11790

Predicted

in vivo

in vitro

Enriched domain pair

FSW = 0.0749

Unknown

 RAN-BINDING PROTEIN 1 DOMAIN-CONTAINING PROTEIN / RANBP1 DOMAIN-CONTAINING PROTEIN
AT5G16040

Predicted

in vivo

in vivo

Affinity Capture-MS

FSW = 0.0237

Unknown

 REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT2G03667

Predicted

Affinity Capture-MS

FSW = 0.0368

Unknown

 ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING)
AT2G21250

Predicted

Affinity Capture-MS

FSW = 0.0381

Unknown

 MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE
AT2G46860

Predicted

Affinity Capture-MS

FSW = 0.0542

Unknown

 ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT3G30842

Predicted

Affinity Capture-MS

FSW = 0.0688

Unknown

 PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G48780

Predicted

Affinity Capture-MS

FSW = 0.0619

Unknown

 SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE
AT2G31020

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0196

Unknown

 ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G47970

Predicted

Affinity Capture-MS

FSW = 0.0120

Unknown

 NPL4 FAMILY PROTEIN
AT5G24840

Predicted

Affinity Capture-MS

FSW = 0.0078

Unknown

 TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT5G35680

Predicted

Affinity Capture-MS

in vitro

FSW = 0.0148

Unknown

 EUKARYOTIC TRANSLATION INITIATION FACTOR 1A PUTATIVE / EIF-1A PUTATIVE / EIF-4C PUTATIVE
AT1G35470

Predicted

in vivo

in vitro

in vitro

in vivo

FSW = 0.0481

Unknown

 SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN
AT3G03110

Predicted

in vitro

Enriched domain pair

FSW = 0.0521

Unknown

 XPO1B BINDING / PROTEIN TRANSPORTER
AT5G55190

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

FSW = 0.3865

Unknown

 RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G55080

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.0251

Unknown

 ATRAN4 (RAS-RELATED NUCLEAR PROTEIN 4) GTP BINDING / GTPASE/ PROTEIN BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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