Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G72560 - ( PSD (PAUSED) nucleobase nucleoside nucleotide and nucleic acid transmembrane transporter/ tRNA binding )
69 Proteins interacs with AT1G72560| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
| AT1G07920 | Predictedinterologs mappingsynthetic growth defect | FSW = 0.0412
| Class C:nucleus | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G49010
   | Predictedsynthetic growth defect | FSW = 0.0091
| Class C:nucleus | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G07590
| Predictedtwo hybrid | FSW = 0.0069
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT4G02840
| Predictedinteraction predictiontwo hybrid | FSW = 0.0052
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT5G20020
| Predictedin vitroin vitro | FSW = 0.0190
| Class C:nucleus | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT1G55920
| PredictedPhenotypic Enhancement | FSW = 0.0131
| Class C:nucleus | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
| AT5G20010
| Predictedtwo hybrid | FSW = 0.0374
| Class C:nucleus | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT5G60390
| Predictedinterologs mapping | FSW = 0.0113
| Class C:nucleus | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT1G07940 | Predictedsynthetic growth defectinterologs mapping | FSW = 0.0338
| Class C:nucleus | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT4G28860
| PredictedAffinity Capture-WesternAffinity Capture-MSReconstituted Complextwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-Westerntwo hybridCo-purificationColocalization | FSW = 0.1640
| Class C:nucleus | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G67270
| Predictedsynthetic growth defect | FSW = 0.0075
| Class C:nucleus | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
| AT5G35910
| Predictedinterologs mapping | FSW = 0.0057
| Class C:nucleus | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
| AT5G58590
| Predictedin vitro | FSW = 0.0635
| Class C:nucleus | RANBP1 (RAN BINDING PROTEIN 1) PROTEIN BINDING |
| AT5G09590
| PredictedPhenotypic Enhancement | FSW = 0.0341
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
| AT4G16660
| PredictedPhenotypic Enhancement | FSW = 0.0675
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
| AT3G15710
| PredictedSynthetic Lethality | FSW = 0.1025
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0368
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT5G09660
| PredictedAffinity Capture-MS | FSW = 0.0482
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
| AT4G26970
| PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
| AT3G44610
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purificationColocalization | FSW = 0.1307
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT2G01350
| PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) NICOTINATE-NUCLEOTIDE DIPHOSPHORYLASE (CARBOXYLATING) |
| AT1G10070
| PredictedSynthetic Lethality | FSW = 0.0289
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
| AT5G54810
| PredictedSynthetic Rescue | FSW = 0.0146
| Unknown | TSB1 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 1) TRYPTOPHAN SYNTHASE |
| AT3G54670
| PredictedPhenotypic Enhancement | FSW = 0.0383
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
| AT5G03650
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0463
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
| AT5G58640
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2198
| Unknown | SELENOPROTEIN-RELATED |
| AT5G52640
| Predictedsynthetic growth defect | FSW = 0.0035
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT3G11730
| PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
| AT4G14350
| PredictedAffinity Capture-MS | FSW = 0.0349
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT4G21680
| PredictedPhenotypic Enhancement | FSW = 0.0197
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
| AT3G53430
| Predictedsynthetic growth defect | FSW = 0.0381
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12B) |
| AT5G47630
| Predictedsynthetic growth defect | FSW = 0.1352
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
| AT1G22660
| Predictedinterologs mapping | FSW = 0.0317
| Unknown | TRNA-NUCLEOTIDYLTRANSFERASE PUTATIVE / TRNA ADENYLYLTRANSFERASE PUTATIVE |
| AT4G33710
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexCo-purificationSynthetic Lethality | FSW = 0.1871
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT1G50110
| Predictedtwo hybrid | FSW = 0.0541
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 6 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 6 (BCAT6) |
| AT3G47690
| Predictedsynthetic growth defect | FSW = 0.0057
| Unknown | ATEB1A MICROTUBULE BINDING |
| AT5G41480
| PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
| AT4G13780
| Predictedinterologs mapping | FSW = 0.0093
| Unknown | METHIONINE--TRNA LIGASE PUTATIVE / METHIONYL-TRNA SYNTHETASE PUTATIVE / METRS PUTATIVE |
| AT5G55190
| Predictedin vitroin vitrotwo hybrid | FSW = 0.0311
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT1G04170
| Predictedtwo hybrid | FSW = 0.0149
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
| AT1G06790
| Predictedinteraction predictiontwo hybrid | FSW = 0.0120
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT1G09270
| PredictedAffinity Capture-MS | FSW = 0.0521
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
| AT1G13950
| PredictedSynthetic Lethalityinterologs mapping | FSW = 0.0641
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
| AT1G26320
| PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationColocalization | FSW = 0.1259
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
| AT1G68530
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationColocalizationAffinity Capture-Western | FSW = 0.2206
| Unknown | KCS6 (3-KETOACYL-COA SYNTHASE 6) CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS |
| AT1G69370
| Predictedsynthetic growth defect | FSW = 0.0616
| Unknown | CM3 (CHORISMATE MUTASE 3) CHORISMATE MUTASE |
| AT1G20370
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0278
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
| AT1G77780
| Predictedinterologs mappingSynthetic Lethality | FSW = 0.2201
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
| AT2G40730
| PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0304
| Unknown | HEAT REPEAT-CONTAINING PROTEIN |
| AT3G07300
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0188
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
| AT3G62960
| Predictedtwo hybrid | FSW = 0.0474
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
| AT4G04700
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexPhenotypic EnhancementColocalizationCo-purificationinterologs mappingSynthetic Lethality | FSW = 0.1789
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT4G21480
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1726
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT4G35520
| PredictedAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-MS | FSW = 0.2074
| Unknown | MLH3 (MUTL PROTEIN HOMOLOG 3) ATP BINDING / MISMATCHED DNA BINDING |
| AT5G04800
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-Western | FSW = 0.1900
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
| AT5G13480
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1003
| Unknown | FY PROTEIN BINDING |
| AT5G45620
| Predictedinterologs mappingAffinity Capture-Western | FSW = 0.0532
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
| AT5G50430
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0224
| Unknown | UBC33 (UBIQUITIN-CONJUGATING ENZYME 33) UBIQUITIN-PROTEIN LIGASE |
| AT2G15910
| PredictedAffinity Capture-MS | FSW = 0.0349
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
| AT2G16740
| PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT2G23080
| Predictedinterologs mapping | FSW = 0.0349
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
| AT3G04710
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0066
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
| AT3G12200
| PredictedAffinity Capture-MS | FSW = 0.0529
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT3G53030
| PredictedSynthetic Lethality | FSW = 0.0394
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
| AT3G62760
| PredictedAffinity Capture-MS | FSW = 0.0877
| Unknown | ATGSTF13 GLUTATHIONE TRANSFERASE |
| AT4G29140
| PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | MATE EFFLUX PROTEIN-RELATED |
| AT5G48630
| Predictedinterologs mapping | FSW = 0.0372
| Unknown | CYCLIN FAMILY PROTEIN |
| AT5G64760
| PredictedPhenotypic Enhancement | FSW = 0.0391
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
| AT1G17280
| PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | UBC34 (UBIQUITIN-CONJUGATING ENZYME 34) UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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