Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G68530 - ( KCS6 (3-KETOACYL-COA SYNTHASE 6) catalytic/ transferase transferring acyl groups other than amino-acyl groups )
32 Proteins interacs with AT1G68530Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0222
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G19830 | PredictedPhenotypic Suppression | FSW = 0.0412
| Unknown | AMINOACYL-TRNA HYDROLASE |
AT3G44610 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternColocalizationCo-purification | FSW = 0.1860
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G80030 | PredictedSynthetic Lethality | FSW = 0.0088
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G45145 | PredictedPhenotypic Suppression | FSW = 0.0516
| Unknown | ATTRX5 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT5G58640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSColocalizationCo-purification | FSW = 0.3503
| Unknown | SELENOPROTEIN-RELATED |
AT1G80050 | PredictedPhenotypic Enhancement | FSW = 0.0229
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT4G28860 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSColocalizationtwo hybrid | FSW = 0.3099
| Unknown | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G09800 | PredictedPhenotypic Enhancement | FSW = 0.1024
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G72560 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationColocalizationAffinity Capture-Western | FSW = 0.2206
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT3G01020 | PredictedPhenotypic Enhancement | FSW = 0.0500
| Unknown | ISU2 (ISCU-LIKE 2) STRUCTURAL MOLECULE |
AT5G47630 | PredictedAffinity Capture-MS | FSW = 0.1451
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT2G19980 | PredictedAffinity Capture-MS | FSW = 0.0809
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSColocalization | FSW = 0.2377
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.0917
| Unknown | ARA6 GTP BINDING / GTPASE |
AT3G06100 | PredictedAffinity Capture-MS | FSW = 0.0627
| Unknown | NIP71 (NOD26-LIKE INTRINSIC PROTEIN 71) WATER CHANNEL |
AT4G16420 | PredictedSynthetic Lethality | FSW = 0.0408
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G10980 | PredictedPhenotypic Suppression | FSW = 0.0711
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 8 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G616701) HAS 482 BLAST HITS TO 481 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 255 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT1G26320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2537
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G66590 | PredictedPhenotypic Suppression | FSW = 0.0525
| Unknown | COX19 FAMILY PROTEIN |
AT4G04700 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternColocalization | FSW = 0.1620
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G21480 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1874
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G04800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2989
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G13480 | PredictedAffinity Capture-MS | FSW = 0.1829
| Unknown | FY PROTEIN BINDING |
AT5G45620 | Predictedinterologs mappingAffinity Capture-Western | FSW = 0.1083
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT2G15910 | PredictedPhenotypic Suppression | FSW = 0.0513
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT2G30800 | PredictedPhenotypic Suppression | FSW = 0.1794
| Unknown | HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G27440 | PredictedPhenotypic Enhancement | FSW = 0.1042
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT4G30510 | PredictedAffinity Capture-MS | FSW = 0.0556
| Unknown | ATATG18B |
AT4G32850 | PredictedAffinity Capture-MS | FSW = 0.0376
| Unknown | NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING |
AT5G44830 | PredictedPhenotypic Enhancement | FSW = 0.0809
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT1G71160 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1143
| Unknown | KCS7 (3-KETOACYL-COA SYNTHASE 7) ACYLTRANSFERASE/ CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454