Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G13480 - ( FY protein binding )
57 Proteins interacs with AT5G13480Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G37010 | Experimental | FSW = 0.0057
| Unknown | CALTRACTIN PUTATIVE / CENTRIN PUTATIVE |
AT4G21100 | ExperimentalcoimmunoprecipitationAffinity Capture-Western | FSW = 0.0246
| Unknown | DDB1B (DAMAGED DNA BINDING PROTEIN 1 B) DAMAGED DNA BINDING / PROTEIN BINDING |
AT4G05420 | Experimentaltwo hybrid | FSW = 0.0204
| Unknown | DDB1A (DAMAGED DNA BINDING PROTEIN 1A) DNA BINDING / PROTEIN BINDING |
AT5G23880 | Experimentaltwo hybridAffinity Capture-MSAffinity Capture-Westerntwo hybridaffinity technology | FSW = 0.3344
| Unknown | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING |
AT5G51660 | ExperimentalAffinity Capture-Western | FSW = 0.3217
| Unknown | CPSF160 NUCLEIC ACID BINDING |
AT4G04885 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.1401
| Unknown | PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING |
AT4G16280 | Experimentalin vitroReconstituted ComplexReconstituted ComplexReconstituted Complexin vitro | FSW = 0.0178
| Unknown | FCA RNA BINDING |
AT3G04680 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.1040
| Unknown | CLPS3 (CLP-SIMILAR PROTEIN 3) BINDING |
AT1G61010 | ExperimentalAffinity Capture-Western | FSW = 0.2796
| Unknown | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING |
AT2G01730 | ExperimentalAffinity Capture-Western | FSW = 0.1443
| Unknown | ATCPSF73-II (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73 KDA SUBUNIT-II) CATALYTIC/ PROTEIN BINDING |
AT1G15710 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | PREPHENATE DEHYDROGENASE FAMILY PROTEIN |
AT2G29690 | PredictedAffinity Capture-MS | FSW = 0.0625
| Unknown | ASA2 (ANTHRANILATE SYNTHASE 2) ANTHRANILATE SYNTHASE |
AT3G44610 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Western | FSW = 0.0911
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G73820 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1877
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT5G58640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1169
| Unknown | SELENOPROTEIN-RELATED |
AT5G40370 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0058
| Unknown | GLUTAREDOXIN PUTATIVE |
AT5G23900 | PredictedAffinity Capture-MS | FSW = 0.0278
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT3G17840 | PredictedGene fusion method | FSW = 0.0577
| Unknown | RLK902 ATP BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G24510 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0429
| Unknown | T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE |
AT5G20890 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0361
| Unknown | CHAPERONIN PUTATIVE |
AT4G28860 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.0935
| Unknown | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0077
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT1G16610 | PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | SR45 RNA BINDING / PROTEIN BINDING |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G54910 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1287
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G17980 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.2563
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT1G72560 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1003
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT4G33710 | PredictedAffinity Capture-MS | FSW = 0.0594
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G45280 | PredictedAffinity Capture-MS | FSW = 0.0776
| Unknown | SYP72 (SYNTAXIN OF PLANTS 72) PROTEIN TRANSPORTER |
AT3G02530 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0489
| Unknown | CHAPERONIN PUTATIVE |
AT3G20050 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0369
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G14300 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0590
| Unknown | BINDING |
AT1G17760 | Predictedinteraction predictionReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.1536
| Unknown | CSTF77 PROTEIN BINDING |
AT1G21570 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2674
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT1G22240 | PredictedAffinity Capture-MS | FSW = 0.0191
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
AT1G26320 | PredictedAffinity Capture-MS | FSW = 0.0850
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G68530 | PredictedAffinity Capture-MS | FSW = 0.1829
| Unknown | KCS6 (3-KETOACYL-COA SYNTHASE 6) CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS |
AT2G20280 | PredictedAffinity Capture-MS | FSW = 0.0682
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT2G39840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0762
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G21060 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0074
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G02860 | PredictedAffinity Capture-MS | FSW = 0.0934
| Unknown | CATALYTIC |
AT4G04700 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MS | FSW = 0.0857
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G21480 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0816
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G04800 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0885
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT2G16230 | PredictedCo-purification | FSW = 0.0268
| Unknown | CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT4G38250 | Predictedbiochemical | FSW = 0.0092
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G14530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3333
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G45620 | Predictedinterologs mapping | FSW = 0.0205
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G47430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2645
| Unknown | ZINC ION BINDING |
AT5G66360 | PredictedAffinity Capture-MS | FSW = 0.0682
| Unknown | RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN |
AT2G29400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1016
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G17410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2598
| Unknown | ZINC ION BINDING |
AT1G73840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3174
| Unknown | ESP1 (ENHANCED SILENCING PHENOTYPE 1) |
AT5G02530 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0089
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G03210 | PredictedAffinity Capture-MS | FSW = 0.0688
| Unknown | PHENAZINE BIOSYNTHESIS PHZC/PHZF FAMILY PROTEIN |
AT2G07040 | PredictedGene fusion method | FSW = 0.0330
| Unknown | PRK2A ATP BINDING / PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G64610 | PredictedGene fusion method | FSW = 0.0345
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454