Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G17760 - ( CSTF77 protein binding )

48 Proteins interacs with AT1G17760
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G10350

Experimental

FSW = 0.0060

Unknown

POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT2G43370

Experimental

FSW = 0.0157

Unknown

U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA PUTATIVE
AT1G71800

Experimental

FSW = 0.0314

Unknown

CLEAVAGE STIMULATION FACTOR PUTATIVE
AT1G30460

Experimental

Reconstituted Complex

FSW = 0.1937

Unknown

CPSF30 RNA BINDING / CALMODULIN BINDING / ENDONUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING
AT1G66500

Experimental

FSW = 0.3556

Unknown

ZINC FINGER (C2H2-TYPE) FAMILY PROTEIN
AT5G43620

Experimental

FSW = 0.2182

Unknown

S-LOCUS PROTEIN-RELATED
AT5G58040

Experimental

two hybrid

FSW = 0.0710

Unknown

ATFIP1[V] (ARABIDOPSIS HOMOLOG OF YEAST FIP1 [V]) RNA BINDING / PROTEIN BINDING
AT1G28200

Experimental

two hybrid

FSW = 0.0399

Unknown

FIP1 (FH INTERACTING PROTEIN 1)
AT1G49240

Predicted

Affinity Capture-MS

Synthetic Lethality

FSW = 0.0153

Unknown

ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G49010

Predicted

Affinity Capture-MS

FSW = 0.0299

Unknown

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G22440

Predicted

interologs mapping

FSW = 0.0288

Unknown

60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT1G18540

Predicted

Affinity Capture-MS

FSW = 0.0479

Unknown

60S RIBOSOMAL PROTEIN L6 (RPL6A)
AT2G01320

Predicted

Phenotypic Suppression

Phenotypic Enhancement

FSW = 0.0092

Unknown

ABC TRANSPORTER FAMILY PROTEIN
AT4G35800

Predicted

two hybrid

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Co-expression

FSW = 0.0437

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G12110

Predicted

Synthetic Lethality

Affinity Capture-MS

interaction prediction

FSW = 0.0090

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G74060

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0584

Unknown

60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT5G35910

Predicted

Synthetic Rescue

FSW = 0.0385

Unknown

3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT1G03190

Predicted

Synthetic Rescue

FSW = 0.0333

Unknown

UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT5G54910

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1850

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G17680

Predicted

Reconstituted Complex

FSW = 0.1926

Unknown

TRANSCRIPTION FACTOR-RELATED
AT1G17980

Predicted

Synthetic Lethality

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3185

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT4G08350

Predicted

Affinity Capture-MS

FSW = 0.0449

Unknown

GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT4G14300

Predicted

interaction prediction

two hybrid

Synthetic Lethality

interologs mapping

FSW = 0.0741

Unknown

HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / HNRNP PUTATIVE
AT2G34210

Predicted

Affinity Capture-MS

FSW = 0.0440

Unknown

STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT5G23880

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.4375

Unknown

CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING
AT5G51660

Predicted

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3650

Unknown

CPSF160 NUCLEIC ACID BINDING
AT4G30800

Predicted

Affinity Capture-MS

FSW = 0.0242

Unknown

40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT5G60940

Predicted

in vitro

FSW = 0.0686

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G04950

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0261

Unknown

TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G16350

Predicted

Affinity Capture-MS

FSW = 0.0603

Unknown

INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT1G61010

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2670

Unknown

CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING
AT3G04680

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2444

Unknown

CLPS3 (CLP-SIMILAR PROTEIN 3) BINDING
AT4G04885

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

two hybrid

Affinity Capture-Western

two hybrid

Affinity Capture-Western

Synthetic Lethality

FSW = 0.2705

Unknown

PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING
AT4G15770

Predicted

Synthetic Lethality

FSW = 0.0223

Unknown

RNA BINDING / PROTEIN BINDING
AT4G23920

Predicted

interologs mapping

FSW = 0.0315

Unknown

UGE2 (UDP-D-GLUCOSE/UDP-D-GALACTOSE 4-EPIMERASE 2) UDP-GLUCOSE 4-EPIMERASE/ PROTEIN DIMERIZATION
AT5G13480

Predicted

interaction prediction

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

FSW = 0.1536

Unknown

FY PROTEIN BINDING
AT5G14530

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1628

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G47430

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2698

Unknown

ZINC ION BINDING
AT3G03110

Predicted

two hybrid

FSW = 0.0323

Unknown

XPO1B BINDING / PROTEIN TRANSPORTER
AT3G46320Predicted

Affinity Capture-MS

FSW = 0.0037

Unknown

HISTONE H4
AT3G61620

Predicted

Synthetic Rescue

FSW = 0.0192

Unknown

RRP41 3-5-EXORIBONUCLEASE/ RNA BINDING
AT4G34100

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.0174

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT4G17410

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2988

Unknown

ZINC ION BINDING
AT3G48960

Predicted

Affinity Capture-MS

FSW = 0.0326

Unknown

60S RIBOSOMAL PROTEIN L13 (RPL13C)
AT1G73840

Predicted

Affinity Capture-Western

far western blotting

Synthetic Lethality

FSW = 0.3256

Unknown

ESP1 (ENHANCED SILENCING PHENOTYPE 1)
AT1G49760

Predicted

interologs mapping

interaction prediction

FSW = 0.0685

Unknown

PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT3G13224

Predicted

Synthetic Lethality

two hybrid

FSW = 0.0301

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G67320

Predicted

interaction prediction

two hybrid

FSW = 0.0095

Unknown

HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454