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AT5G22440 - ( 60S ribosomal protein L10A (RPL10aC) )

84 Proteins interacs with AT5G22440

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.4501	Class C: unclear nucleus	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT5G20020	Predicted two hybrid	FSW = 0.0027	Class C: unclear nucleus	RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.3558	Class C: nucleus	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.5503	Class C: nucleus	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.3589	Class C: nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.5885	Class C: nucleus	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200	Predicted Affinity Capture-MS	FSW = 0.3165	Class C: nucleus	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT2G47610	Predicted Affinity Capture-MS	FSW = 0.3879	Class C: nucleus	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.3350	Class C: nucleus	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.3964	Class C: nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.5532	Class C: nucleus	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.3573	Class C: nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G58510	Predicted Affinity Capture-MS	FSW = 0.1333	Class C: nucleus	DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT5G60390	Predicted Affinity Capture-MS	FSW = 0.0044	Class C: nucleus	ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT3G11964	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1381	Class C: nucleus	RNA BINDING
AT2G27710	Predicted Affinity Capture-MS	FSW = 0.5120	Class C: nucleus	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.5066	Class C: nucleus	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G39740	Predicted Affinity Capture-MS	FSW = 0.3765	Class C: nucleus	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.5120	Class C: nucleus	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.4056	Class C: nucleus	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.4339	Class C: nucleus	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT5G04600	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3399	Class C: nucleus	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.5389	Class C: nucleus	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT4G29390	Predicted Affinity Capture-MS	FSW = 0.2388	Class C: nucleus	40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT3G23620	Predicted Affinity Capture-MS	FSW = 0.2553	Class C: nucleus	BRIX DOMAIN-CONTAINING PROTEIN
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.4002	Class C: nucleus	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G25630	Predicted Affinity Capture-MS	FSW = 0.2078	Class C: nucleus	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G72440	Predicted Affinity Capture-MS	FSW = 0.3585	Class C: nucleus	EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT3G16810	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3013	Class C: nucleus	APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING
AT5G55920	Predicted Affinity Capture-MS	FSW = 0.2893	Class C: nucleus	NUCLEOLAR PROTEIN PUTATIVE
AT3G58660	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3453	Class C: nucleus	60S RIBOSOMAL PROTEIN-RELATED
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.4764	Class C: nucleus	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT1G19120	Predicted Affinity Capture-RNA	FSW = 0.0246	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G48870	Predicted Affinity Capture-RNA	FSW = 0.0202	Class C: nucleus	SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.2302	Unknown	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT1G33140	Predicted Affinity Capture-MS	FSW = 0.3646	Unknown	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.3405	Unknown	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.4184	Unknown	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.3507	Unknown	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT1G66580	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.4775	Unknown	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT4G18730	Predicted Affinity Capture-MS	FSW = 0.0949	Unknown	RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.4961	Unknown	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT5G14590	Predicted Affinity Capture-MS	FSW = 0.0227	Unknown	ISOCITRATE DEHYDROGENASE PUTATIVE / NADP+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.5270	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.5680	Unknown	STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G26110	Predicted Affinity Capture-MS	FSW = 0.0150	Unknown	NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.5144	Unknown	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT1G74270	Predicted Affinity Capture-MS	FSW = 0.2368	Unknown	60S RIBOSOMAL PROTEIN L35A (RPL35AC)
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.2746	Unknown	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.4649	Unknown	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT1G08360	Predicted Phylogenetic profile method Co-expression	FSW = 0.0238	Unknown	60S RIBOSOMAL PROTEIN L10A (RPL10AA)
AT2G27530	Predicted Phylogenetic profile method Co-expression	FSW = 0.0257	Unknown	PGY1 (PIGGYBACK1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G16760	Predicted two hybrid	FSW = 0.0108	Unknown	ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE
AT1G50920	Predicted Affinity Capture-MS	FSW = 0.3238	Unknown	GTP-BINDING PROTEIN-RELATED
AT2G47990	Predicted Affinity Capture-MS	FSW = 0.0625	Unknown	SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT1G79750	Predicted Affinity Capture-MS	FSW = 0.0163	Unknown	ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.5228	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G56710	Predicted Affinity Capture-MS	FSW = 0.4193	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT1G10490	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3025	Unknown	UNKNOWN PROTEIN
AT5G19510	Predicted two hybrid	FSW = 0.0171	Unknown	ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2)
AT1G16350	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0574	Unknown	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT1G80710	Predicted Affinity Capture-MS	FSW = 0.0077	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G34357	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2619	Unknown	BINDING
AT3G15460	Predicted Affinity Capture-MS	FSW = 0.3130	Unknown	BRIX DOMAIN-CONTAINING PROTEIN
AT3G23390	Predicted Affinity Capture-MS	FSW = 0.3935	Unknown	60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.4715	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.4965	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G15770	Predicted Affinity Capture-MS	FSW = 0.1809	Unknown	RNA BINDING / PROTEIN BINDING
AT4G34910	Predicted Affinity Capture-MS	FSW = 0.1981	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH16)
AT1G13160	Predicted Affinity Capture-MS	FSW = 0.1717	Unknown	SDA1 FAMILY PROTEIN
AT1G15440	Predicted Affinity Capture-MS	FSW = 0.1224	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G17760	Predicted interologs mapping	FSW = 0.0288	Unknown	CSTF77 PROTEIN BINDING
AT1G20080	Predicted Affinity Capture-MS	FSW = 0.0694	Unknown	SYTB
AT1G59760	Predicted Affinity Capture-MS	FSW = 0.0826	Unknown	ATP-DEPENDENT RNA HELICASE PUTATIVE
AT1G60780	Predicted Affinity Capture-MS	FSW = 0.0586	Unknown	HAP13 (HAPLESS 13) PROTEIN BINDING
AT2G03820	Predicted Affinity Capture-MS	FSW = 0.1232	Unknown	NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN
AT3G12670	Predicted Affinity Capture-MS	FSW = 0.0278	Unknown	EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC
AT3G16840	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2050	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.5071	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT4G19210	Predicted Affinity Capture-MS	FSW = 0.1988	Unknown	ATRLI2 TRANSPORTER
AT5G05450	Predicted Affinity Capture-MS	FSW = 0.2479	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE (RH18)
AT5G10270	Predicted Affinity Capture-MS	FSW = 0.0090	Unknown	CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G13570	Predicted Affinity Capture-RNA	FSW = 0.0271	Unknown	DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION
AT5G65900	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3426	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT5G22440 - ( 60S ribosomal protein L10A (RPL10aC) )

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