Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G80710 - ( transducin family protein / WD-40 repeat family protein )

89 Proteins interacs with AT1G80710
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G63400

Predicted

Affinity Capture-Western

FSW = 0.0120

Unknown

ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT3G09630

Predicted

Phenotypic Enhancement

FSW = 0.0502

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0531

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G22110

Predicted

Phenotypic Enhancement

FSW = 0.0379

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G13450

Predicted

Synthetic Lethality

FSW = 0.0795

Unknown

ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE
AT5G22440

Predicted

Affinity Capture-MS

FSW = 0.0077

Unknown

60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT2G06510

Predicted

Affinity Capture-MS

FSW = 0.0224

Unknown

RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT1G74560

Predicted

Synthetic Lethality

FSW = 0.0912

Unknown

NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING
AT5G01410

Predicted

Dosage Growth Defect

FSW = 0.0702

Unknown

RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION
AT3G22890

Predicted

synthetic growth defect

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.1135

Unknown

APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT3G48990

Predicted

Affinity Capture-MS

FSW = 0.0233

Unknown

AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN
AT3G48170

Predicted

synthetic growth defect

FSW = 0.0997

Unknown

ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT2G45130

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0577

Unknown

SPX3 (SPX DOMAIN GENE 3)
AT5G65430

Predicted

Phenotypic Enhancement

FSW = 0.0406

Unknown

GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G07790

Predicted

Affinity Capture-MS

FSW = 0.0234

Unknown

HTB1 DNA BINDING
AT1G55920

Predicted

Phenotypic Enhancement

FSW = 0.0444

Unknown

ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT2G39290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0570

Unknown

PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE
AT1G19660

Predicted

Dosage Growth Defect

FSW = 0.0597

Unknown

WOUND-RESPONSIVE FAMILY PROTEIN
AT1G66430

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0619

Unknown

PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN
AT5G51820

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0877

Unknown

PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT1G48860

Predicted

Phenotypic Enhancement

FSW = 0.0923

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT5G03650

Predicted

Dosage Growth Defect

FSW = 0.0690

Unknown

SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME
AT5G60540

Predicted

Phenotypic Enhancement

FSW = 0.1587

Unknown

PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT5G47510

Predicted

interologs mapping

FSW = 0.0375

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT5G17310

Predicted

Affinity Capture-MS

FSW = 0.0117

Unknown

UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE
AT4G14350

Predicted

Phenotypic Enhancement

FSW = 0.0353

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G80050

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0767

Unknown

APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT4G18800

Predicted

Affinity Capture-Western

Synthetic Rescue

FSW = 0.0409

Unknown

ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT5G20890

Predicted

Affinity Capture-MS

FSW = 0.0092

Unknown

CHAPERONIN PUTATIVE
AT2G24490

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0202

Unknown

RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT4G02070

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0333

Unknown

MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING
AT2G40290

Predicted

Affinity Capture-MS

FSW = 0.0109

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT3G57300

Predicted

Phenotypic Enhancement

FSW = 0.0443

Unknown

INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G53530

Predicted

Affinity Capture-Western

Reconstituted Complex

two hybrid

Affinity Capture-MS

co-fractionation

Co-fractionation

Dosage Growth Defect

FSW = 0.0909

Unknown

SIGNAL PEPTIDASE I FAMILY PROTEIN
AT3G49920

Predicted

Phenotypic Enhancement

FSW = 0.0470

Unknown

VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL
AT5G35160

Predicted

synthetic growth defect

FSW = 0.0340

Unknown

LOCATED IN INTEGRAL TO MEMBRANE GOLGI APPARATUS EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NONASPANIN (TM9SF) (INTERPROIPR004240) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G126501) HAS 1053 BLAST HITS TO 1004 PROTEINS IN 163 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 478 FUNGI - 143 PLANTS - 250 VIRUSES - 0 OTHER EUKARYOTES - 182 (SOURCE NCBI BLINK)
AT2G47990

Predicted

synthetic growth defect

FSW = 0.0287

Unknown

SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT3G13900

Predicted

synthetic growth defect

FSW = 0.0150

Unknown

ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT5G63960

Predicted

Dosage Growth Defect

FSW = 0.0460

Unknown

EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G11510

Predicted

Affinity Capture-Western

Synthetic Lethality

synthetic growth defect

FSW = 0.0877

Unknown

DNA-BINDING STOREKEEPER PROTEIN-RELATED
AT1G26690

Predicted

Phenotypic Enhancement

FSW = 0.1070

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G52500

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.0685

Unknown

ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT1G54560Predicted

Phenotypic Enhancement

FSW = 0.1062

Unknown

XIE MOTOR/ PROTEIN BINDING
AT1G55060

Predicted

synthetic growth defect

FSW = 0.0342

Unknown

UBQ12 (UBIQUITIN 12) PROTEIN BINDING
AT1G55300

Predicted

Synthetic Rescue

FSW = 0.0575

Unknown

TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G60680

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0392

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G07820Predicted

Phenotypic Enhancement

FSW = 0.0326

Unknown

HISTONE H4
AT1G08260

Predicted

Dosage Growth Defect

FSW = 0.0385

Unknown

TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G12130

Predicted

interologs mapping

FSW = 0.0086

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT1G27040

Predicted

Phenotypic Enhancement

FSW = 0.0680

Unknown

NITRATE TRANSPORTER PUTATIVE
AT1G34340

Predicted

Dosage Growth Defect

FSW = 0.0526

Unknown

ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN
AT1G34580

Predicted

Phenotypic Enhancement

FSW = 0.0416

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT2G14880

Predicted

Affinity Capture-MS

FSW = 0.0306

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT2G20410

Predicted

two hybrid

FSW = 0.0277

Unknown

ACTIVATING SIGNAL COINTEGRATOR-RELATED
AT2G23820

Predicted

Phenotypic Suppression

FSW = 0.0349

Unknown

METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
AT2G32160

Predicted

Phenotypic Suppression

FSW = 0.1062

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK)
AT2G32415

Predicted

Affinity Capture-Western

FSW = 0.0375

Unknown

3-5 EXONUCLEASE/ NUCLEIC ACID BINDING
AT2G34180

Predicted

Affinity Capture-MS

FSW = 0.0339

Unknown

CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G43190

Predicted

Phenotypic Enhancement

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

two hybrid

synthetic growth defect

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3249

Unknown

RIBONUCLEASE P FAMILY PROTEIN
AT2G48100

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0794

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G06470

Predicted

Affinity Capture-MS

FSW = 0.0513

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G12490

Predicted

Dosage Growth Defect

FSW = 0.0257

Unknown

CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE
AT3G18850

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0705

Unknown

LPAT5 ACYLTRANSFERASE
AT3G46320Predicted

Affinity Capture-MS

FSW = 0.0169

Unknown

HISTONE H4
AT3G47290

Predicted

Phenotypic Suppression

FSW = 0.1262

Unknown

PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
AT3G59540Predicted

Phenotypic Enhancement

FSW = 0.1054

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT3G62770

Predicted

Dosage Growth Defect

FSW = 0.0352

Unknown

ATATG18A
AT4G12790

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0272

Unknown

ATP-BINDING FAMILY PROTEIN
AT4G19560

Predicted

Phenotypic Enhancement

FSW = 0.1612

Unknown

CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE
AT4G29580

Predicted

Phenotypic Suppression

FSW = 0.0384

Unknown

CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT4G38250

Predicted

Phenotypic Enhancement

FSW = 0.0666

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G14050

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0112

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G20340

Predicted

Phenotypic Enhancement

FSW = 0.0941

Unknown

BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT5G24840

Predicted

Dosage Growth Defect

FSW = 0.0445

Unknown

TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT5G49560

Predicted

Phenotypic Enhancement

FSW = 0.0319

Unknown

UNKNOWN PROTEIN
AT5G51300

Predicted

two hybrid

FSW = 0.0118

Unknown

SPLICING FACTOR-RELATED
AT5G54940

Predicted

Phenotypic Suppression

FSW = 0.0277

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT5G58380

Predicted

Phenotypic Enhancement

FSW = 0.0284

Unknown

SIP1 (SOS3-INTERACTING PROTEIN 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G59490

Predicted

Phenotypic Suppression

FSW = 0.0301

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT2G37540

Predicted

synthetic growth defect

FSW = 0.0065

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT3G12200

Predicted

Phenotypic Enhancement

FSW = 0.1225

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G62930

Predicted

Synthetic Lethality

FSW = 0.0284

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT4G09310

Predicted

Affinity Capture-MS

FSW = 0.0240

Unknown

SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN
AT4G29140

Predicted

Affinity Capture-MS

FSW = 0.0310

Unknown

MATE EFFLUX PROTEIN-RELATED
AT5G13860

Predicted

Phenotypic Suppression

FSW = 0.0828

Unknown

ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE
AT5G15240

Predicted

Phenotypic Enhancement

FSW = 0.0580

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G26360

Predicted

Affinity Capture-MS

FSW = 0.0086

Unknown

CHAPERONIN PUTATIVE
AT5G49970

Predicted

Phenotypic Enhancement

FSW = 0.0857

Unknown

ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT1G64520

Predicted

two hybrid

FSW = 0.0027

Unknown

RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454