Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G19660 - ( wound-responsive family protein )

96 Proteins interacs with AT1G19660
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G19320

Predicted

Affinity Capture-MS

FSW = 0.0567

Class C:

plastid

 RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR
AT3G47520

Predicted

Phenotypic Suppression

interologs mapping

FSW = 0.0106

Class C:

plastid

 MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT5G12470

Predicted

Synthetic Lethality

FSW = 0.0100

Class C:

plastid

 UNKNOWN PROTEIN
AT5G01410

Predicted

Synthetic Lethality

FSW = 0.0546

Class C:

plastid

 RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION
AT5G11520

Predicted

two hybrid

FSW = 0.0222

Class C:

plastid

 ASP3 (ASPARTATE AMINOTRANSFERASE 3) L-ASPARTATE2-OXOGLUTARATE AMINOTRANSFERASE
AT2G45130

Predicted

Affinity Capture-MS

FSW = 0.0538

Class C:

plastid

 SPX3 (SPX DOMAIN GENE 3)
AT5G42130

Predicted

Synthetic Lethality

FSW = 0.0334

Class C:

plastid

 MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT5G16150

Predicted

two hybrid

FSW = 0.0132

Class C:

plastid

 PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G44610

Predicted

Synthetic Lethality

FSW = 0.0138

Class C:

plastid

 PROTEIN KINASE FAMILY PROTEIN
AT1G64190

Predicted

Affinity Capture-MS

FSW = 0.0206

Class C:

plastid

 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT4G13590

Predicted

Synthetic Lethality

FSW = 0.0220

Class C:

plastid

 UNKNOWN PROTEIN
AT1G12900

Predicted

Synthetic Lethality

FSW = 0.0377

Class C:

plastid

 GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT5G53480

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.0465

Class C:

plastid

 IMPORTIN BETA-2 PUTATIVE
AT5G63980

Predicted

Synthetic Rescue

FSW = 0.0075

Class C:

plastid

 SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE
AT5G09510

Predicted

Synthetic Lethality

FSW = 0.0224

Unknown

 40S RIBOSOMAL PROTEIN S15 (RPS15D)
AT3G49010

Predicted

Affinity Capture-MS

FSW = 0.0343

Unknown

 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G36130

Predicted

interologs mapping

FSW = 0.0530

Unknown

 60S RIBOSOMAL PROTEIN L8 (RPL8C)
AT2G37270

Predicted

Synthetic Lethality

FSW = 0.0301

Unknown

 ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G12010

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0316

Unknown

 UNKNOWN PROTEIN
AT2G45200

Predicted

interologs mapping

FSW = 0.0166

Unknown

 GOS12 (GOLGI SNARE 12) SNARE BINDING
AT3G13080

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0826

Unknown

 ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE
AT5G07090

Predicted

Synthetic Lethality

FSW = 0.0163

Unknown

 40S RIBOSOMAL PROTEIN S4 (RPS4B)
AT5G24780

Predicted

Synthetic Lethality

FSW = 0.0264

Unknown

 VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING
AT3G62870

Predicted

synthetic growth defect

two hybrid

FSW = 0.0503

Unknown

 60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G13450

Predicted

Synthetic Lethality

FSW = 0.0450

Unknown

 ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE
AT2G04940

Predicted

Affinity Capture-MS

FSW = 0.0200

Unknown

 SCRAMBLASE-RELATED
AT2G45710

Predicted

Synthetic Lethality

co-fractionation

Co-fractionation

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Synthetic Lethality

co-fractionation

Co-fractionation

FSW = 0.2018

Unknown

 40S RIBOSOMAL PROTEIN S27 (RPS27A)
AT3G47370

Predicted

Affinity Capture-MS

FSW = 0.0115

Unknown

 40S RIBOSOMAL PROTEIN S20 (RPS20B)
AT4G36490

Predicted

Affinity Capture-MS

FSW = 0.0568

Unknown

 SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT3G53890

Predicted

Affinity Capture-MS

FSW = 0.0642

Unknown

 40S RIBOSOMAL PROTEIN S21 (RPS21B)
AT1G63290

Predicted

Synthetic Lethality

FSW = 0.0280

Unknown

 RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE
AT2G27500

Predicted

Synthetic Lethality

FSW = 0.0392

Unknown

 GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT5G23900

Predicted

Synthetic Lethality

FSW = 0.0046

Unknown

 60S RIBOSOMAL PROTEIN L13 (RPL13D)
AT3G02870

Predicted

Synthetic Lethality

FSW = 0.0144

Unknown

 VTC4 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ L-GALACTOSE-1-PHOSPHATE PHOSPHATASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE
AT4G35310

Predicted

Synthetic Lethality

FSW = 0.0343

Unknown

 CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G19690

Predicted

Synthetic Lethality

FSW = 0.0356

Unknown

 IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT3G21700

Predicted

interologs mapping

Synthetic Lethality

FSW = 0.0081

Unknown

 SGP2 GTP BINDING
AT3G52250

Predicted

interologs mapping

Synthetic Rescue

FSW = 0.0205

Unknown

 DNA BINDING / TRANSCRIPTION FACTOR
AT2G44510

Predicted

Synthetic Lethality

FSW = 0.0204

Unknown

 P21CIP1-BINDING PROTEIN-RELATED
AT5G60980

Predicted

Affinity Capture-MS

Synthetic Lethality

FSW = 0.0566

Unknown

 NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G53530

Predicted

synthetic growth defect

FSW = 0.1149

Unknown

 SIGNAL PEPTIDASE I FAMILY PROTEIN
AT2G47510

Predicted

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

two hybrid

two hybrid

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

FSW = 0.1086

Unknown

 FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE
AT4G31470

Predicted

two hybrid

FSW = 0.0150

Unknown

 PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT4G33710

Predicted

Synthetic Lethality

FSW = 0.0320

Unknown

 PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G14610

Predicted

Affinity Capture-MS

Synthetic Lethality

Synthetic Lethality

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

Synthetic Lethality

FSW = 0.1743

Unknown

 PR1 (PATHOGENESIS-RELATED GENE 1)
AT3G16050

Predicted

Synthetic Lethality

FSW = 0.0253

Unknown

 A37 PROTEIN HETERODIMERIZATION
AT2G05170

Predicted

Phenotypic Enhancement

synthetic growth defect

Phenotypic Enhancement

Synthetic Lethality

synthetic growth defect

FSW = 0.0724

Unknown

 ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT2G18230

Predicted

Synthetic Lethality

FSW = 0.0277

Unknown

 ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT4G17190

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0575

Unknown

 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G06790

Predicted

Affinity Capture-MS

FSW = 0.0134

Unknown

 RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT1G10350

Predicted

Affinity Capture-MS

FSW = 0.0120

Unknown

 DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT1G05000

Predicted

Affinity Capture-MS

FSW = 0.0180

Unknown

 TYROSINE SPECIFIC PROTEIN PHOSPHATASE FAMILY PROTEIN
AT1G08120

Predicted

Affinity Capture-MS

FSW = 0.0634

Unknown

 LOCATED IN CELLULAR_COMPONENT UNKNOWN BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ATP BINDING / CATALYTIC/ PROTEIN KINASE (TAIRAT5G261101) HAS 380 BLAST HITS TO 380 PROTEINS IN 166 SPECIES ARCHAE - 115 BACTERIA - 0 METAZOA - 110 FUNGI - 39 PLANTS - 20 VIRUSES - 0 OTHER EUKARYOTES - 96 (SOURCE NCBI BLINK)
AT1G14910

Predicted

two hybrid

FSW = 0.0257

Unknown

 EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT1G66590

Predicted

two hybrid

FSW = 0.0205

Unknown

 COX19 FAMILY PROTEIN
AT2G31020

Predicted

Affinity Capture-MS

biochemical

Affinity Capture-Western

Colocalization

FSW = 0.0539

Unknown

 ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G32220

Predicted

interologs mapping

synthetic growth defect

synthetic growth defect

interologs mapping

FSW = 0.1201

Unknown

 60S RIBOSOMAL PROTEIN L27 (RPL27A)
AT2G47090

Predicted

Synthetic Lethality

FSW = 0.0523

Unknown

 NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G62770

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.0508

Unknown

 ATATG18A
AT4G15410

Predicted

interologs mapping

FSW = 0.0516

Unknown

 PUX5 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B PRIME GAMMA) PROTEIN BINDING
AT4G19560

Predicted

Affinity Capture-MS

FSW = 0.0420

Unknown

 CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE
AT4G19880

Predicted

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

co-fractionation

Co-fractionation

co-fractionation

Co-fractionation

Synthetic Lethality

Affinity Capture-MS

FSW = 0.0553

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK)
AT5G46410

Predicted

two hybrid

FSW = 0.0317

Unknown

 NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN
AT5G60550

Predicted

Synthetic Rescue

FSW = 0.0223

Unknown

 GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE
AT1G34580

Predicted

Affinity Capture-MS

FSW = 0.0713

Unknown

 MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G44180

Predicted

synthetic growth defect

FSW = 0.0450

Unknown

 AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE
AT1G47490

Predicted

Synthetic Lethality

FSW = 0.0073

Unknown

 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) RNA BINDING
AT1G66740

Predicted

Synthetic Lethality

FSW = 0.0020

Unknown

 SGA2
AT1G80710

Predicted

Dosage Growth Defect

FSW = 0.0597

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G20290

Predicted

Affinity Capture-MS

FSW = 0.0562

Unknown

 XIG MOTOR/ PROTEIN BINDING
AT2G27170

Predicted

interologs mapping

FSW = 0.0254

Unknown

 TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING
AT2G27920

Predicted

interologs mapping

FSW = 0.0306

Unknown

 SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) SERINE-TYPE CARBOXYPEPTIDASE
AT2G28720

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0082

Unknown

 HISTONE H2B PUTATIVE
AT2G31900

Predicted

Affinity Capture-MS

FSW = 0.0450

Unknown

 XIF MOTOR
AT2G43190

Predicted

Dosage Growth Defect

FSW = 0.0755

Unknown

 RIBONUCLEASE P FAMILY PROTEIN
AT2G44530

Predicted

Synthetic Lethality

FSW = 0.0235

Unknown

 RIBOSE-PHOSPHATE PYROPHOSPHOKINASE PUTATIVE / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE PUTATIVE
AT2G46650

Predicted

Synthetic Lethality

FSW = 0.0044

Unknown

 CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING
AT3G03900

Predicted

two hybrid

FSW = 0.0218

Unknown

 ADENYLYLSULFATE KINASE PUTATIVE
AT3G05760

Predicted

Affinity Capture-MS

FSW = 0.0161

Unknown

 NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G06470

Predicted

interologs mapping

FSW = 0.0286

Unknown

 GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G14370

Predicted

Synthetic Lethality

FSW = 0.0108

Unknown

 WAG2 KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G22320

Predicted

Synthetic Lethality

FSW = 0.0269

Unknown

 NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G25585

Predicted

Synthetic Lethality

FSW = 0.0235

Unknown

 AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS
AT3G53730

Predicted

Synthetic Lethality

FSW = 0.0245

Unknown

 HISTONE H4
AT4G32850

Predicted

Synthetic Lethality

FSW = 0.0599

Unknown

 NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING
AT4G37490

Predicted

Synthetic Lethality

FSW = 0.0133

Unknown

 CYCB11 (CYCLIN B11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G01770

Predicted

Synthetic Lethality

FSW = 0.0433

Unknown

 RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G06420

Predicted

Affinity Capture-MS

FSW = 0.0351

Unknown

 ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G06600

Predicted

Affinity Capture-MS

FSW = 0.0479

Unknown

 UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT5G15070

Predicted

Affinity Capture-MS

FSW = 0.0214

Unknown

 ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G16040

Predicted

Affinity Capture-MS

FSW = 0.0440

Unknown

 REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT5G21170

Predicted

Synthetic Lethality

FSW = 0.0129

Unknown

 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE
AT5G38890

Predicted

Synthetic Lethality

FSW = 0.0164

Unknown

 EXORIBONUCLEASE-RELATED
AT5G46280

Predicted

Synthetic Lethality

FSW = 0.0175

Unknown

 DNA REPLICATION LICENSING FACTOR PUTATIVE
AT5G49970

Predicted

two hybrid

FSW = 0.0504

Unknown

 ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE
AT5G61290

Predicted

Synthetic Lethality

FSW = 0.0200

Unknown

 FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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