Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G31470 - ( pathogenesis-related protein putative )
20 Proteins interacs with AT4G31470Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G66590 | PredictedGene fusion methodCo-expression | FSW = 0.0170
| Class C:extracellular | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.0565
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.0479
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT1G19660 | Predictedtwo hybrid | FSW = 0.0150
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.1644
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT3G11730 | PredictedAffinity Capture-MS | FSW = 0.0185
| Unknown | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
AT1G59830 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0776
| Unknown | PP2A-1 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G59950 | PredictedAffinity Capture-MS | FSW = 0.0278
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT5G48070 | Predictedtwo hybrid | FSW = 0.0750
| Unknown | XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20) HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT4G10920 | Predictedtwo hybrid | FSW = 0.0432
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT2G31020 | Predictedtwo hybrid | FSW = 0.0301
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.0583
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0361
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0177
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G60730 | PredictedPhenotypic Enhancement | FSW = 0.0259
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G25150 | Predictedtwo hybrid | FSW = 0.0232
| Unknown | ACID PHOSPHATASE PUTATIVE |
AT5G01390 | PredictedPhenotypic Suppression | FSW = 0.0970
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G28470 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3273
| Unknown | TRANSPORTER |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.0557
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454