Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G30842 - ( PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding )
112 Proteins interacs with AT3G30842| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G32470
   | PredictedAffinity Capture-MS | FSW = 0.4964
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
| AT2G01250
| PredictedAffinity Capture-MS | FSW = 0.1319
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
| AT2G20450
| PredictedAffinity Capture-MS | FSW = 0.5217
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
| AT3G56190
| PredictedAffinity Capture-MS | FSW = 0.3307
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
| AT1G22780
| PredictedAffinity Capture-MS | FSW = 0.4506
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G12140
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2145
| Unknown | ATCYS1 (A THALIANA CYSTATIN-1) CYSTEINE-TYPE ENDOPEPTIDASE INHIBITOR |
| AT2G34480
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0823
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
| AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.4870
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT2G26910
| PredictedPhylogenetic profile method | FSW = 0.0087
| Unknown | PDR4 (PLEIOTROPIC DRUG RESISTANCE 4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT5G20020
| PredictedAffinity Capture-MS | FSW = 0.0688
| Unknown | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT3G08950
| PredictedAffinity Capture-MS | FSW = 0.4716
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
| AT2G19860
| PredictedAffinity Capture-MS | FSW = 0.5593
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
| AT3G19980
| PredictedAffinity Capture-MS | FSW = 0.4068
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT1G15210
| PredictedAffinity Capture-MS | FSW = 0.5440
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT1G65240
| PredictedAffinity Capture-MS | FSW = 0.1072
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
| AT3G16950
| PredictedAffinity Capture-MS | FSW = 0.4674
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
| AT4G26970
| PredictedAffinity Capture-MS | FSW = 0.2607
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
| AT2G30390
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1417
| Unknown | FC2 (FERROCHELATASE 2) FERROCHELATASE |
| AT5G13050
| PredictedAffinity Capture-MS | FSW = 0.4457
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
| AT3G11630
| PredictedAffinity Capture-MS | FSW = 0.2770
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
| AT5G60390
| PredictedAffinity Capture-MS | FSW = 0.4288
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
| AT5G23740
| PredictedAffinity Capture-MS | FSW = 0.4491
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G75840
| PredictedAffinity Capture-MS | FSW = 0.1862
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
| AT1G27970
| PredictedAffinity Capture-MS | FSW = 0.6246
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
| AT3G13560
| PredictedAffinity Capture-MS | FSW = 0.1098
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
| AT1G75170
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-crystal StructureCo-purificationSynthetic Lethality | FSW = 0.1507
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT5G62300
| PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.4806
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
| AT1G50310
| PredictedAffinity Capture-MS | FSW = 0.2545
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT5G43370
| PredictedAffinity Capture-MS | FSW = 0.4716
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT4G35020
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0967
| Unknown | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
| AT1G13320
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2383
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
| AT3G02870
| PredictedAffinity Capture-MS | FSW = 0.0857
| Unknown | VTC4 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ L-GALACTOSE-1-PHOSPHATE PHOSPHATASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
| AT4G24400
| PredictedAffinity Capture-MS | FSW = 0.3077
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
| AT1G77210
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1218
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT4G36860
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5552
| Unknown | ZINC ION BINDING |
| AT4G33090
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0823
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
| AT1G09640
| PredictedAffinity Capture-MS | FSW = 0.4285
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
| AT2G35690
| PredictedAffinity Capture-MS | FSW = 0.3763
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
| AT2G47640
| PredictedAffinity Capture-MS | FSW = 0.1157
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT5G59870
| PredictedAffinity Capture-MS | FSW = 0.4900
| Unknown | HTA6 DNA BINDING |
| AT5G44500
| PredictedAffinity Capture-MS | FSW = 0.4872
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
| AT2G34440
| PredictedAffinity Capture-MS | FSW = 0.0260
| Unknown | AGL29 (AGAMOUS-LIKE 29) TRANSCRIPTION FACTOR |
| AT2G40290
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0931
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
| AT4G36590
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1345
| Unknown | MADS-BOX PROTEIN (AGL40) |
| AT5G47630
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0831
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
| AT3G10920
| PredictedAffinity Capture-MS | FSW = 0.2124
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
| AT1G72480
| PredictedAffinity Capture-MS | FSW = 0.4918
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
| AT2G13650
| PredictedAffinity Capture-MS | FSW = 0.5032
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
| AT4G30990
| PredictedAffinity Capture-MS | FSW = 0.3434
| Unknown | BINDING |
| AT4G25780
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1938
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT4G31470
| PredictedAffinity Capture-MS | FSW = 0.0583
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT4G33710
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1284
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT1G67730
| Predictedtwo hybrid | FSW = 0.0025
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
| AT3G08730
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1795
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT3G16050
| PredictedAffinity Capture-MS | FSW = 0.3638
| Unknown | A37 PROTEIN HETERODIMERIZATION |
| AT3G52580
| PredictedAffinity Capture-MS | FSW = 0.4530
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
| AT5G41480
| PredictedAffinity Capture-MS | FSW = 0.4639
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
| AT2G24040
| PredictedAffinity Capture-MS | FSW = 0.5212
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
| AT3G22880
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0999
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G47880
| PredictedAffinity Capture-MS | FSW = 0.3886
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
| AT1G10600
| PredictedAffinity Capture-MSsynthetic growth defectAffinity Capture-MSCo-crystal Structuretwo hybridPhenotypic Enhancement | FSW = 0.1625
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN UBIQUITIN-DEPENDENT PROTEIN CATABOLIC PROCESS LOCATED IN CHLOROPLAST EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G161441) HAS 753 BLAST HITS TO 752 PROTEINS IN 167 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 359 FUNGI - 199 PLANTS - 115 VIRUSES - 0 OTHER EUKARYOTES - 80 (SOURCE NCBI BLINK) |
| AT1G31170
| PredictedAffinity Capture-MS | FSW = 0.0427
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
| AT1G51770
| PredictedAffinity Capture-MS | FSW = 0.5794
| Unknown | UNKNOWN PROTEIN |
| AT1G58520
| PredictedAffinity Capture-MS | FSW = 0.2255
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
| AT1G62880
| PredictedAffinity Capture-MS | FSW = 0.5044
| Unknown | CORNICHON FAMILY PROTEIN |
| AT1G64480
| PredictedAffinity Capture-MS | FSW = 0.5679
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
| AT1G71280
| PredictedAffinity Capture-MS | FSW = 0.4445
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT2G03667
| PredictedAffinity Capture-MS | FSW = 0.4711
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
| AT2G17620
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2870
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT2G19910
| PredictedAffinity Capture-MS | FSW = 0.3600
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
| AT2G21250
| PredictedAffinity Capture-MS | FSW = 0.3182
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
| AT2G43360
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3619
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
| AT2G46860
| PredictedAffinity Capture-MS | FSW = 0.5759
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
| AT3G18850
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0781
| Unknown | LPAT5 ACYLTRANSFERASE |
| AT3G19940
| PredictedAffinity Capture-MS | FSW = 0.4775
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT1G08260
| PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
| AT1G11530
| PredictedAffinity Capture-MS | FSW = 0.4145
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
| AT1G20696
| PredictedAffinity Capture-MS | FSW = 0.4175
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT1G20920
| PredictedAffinity Capture-MS | FSW = 0.2550
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
| AT1G26140
| PredictedAffinity Capture-MS | FSW = 0.1071
| Unknown | UNKNOWN PROTEIN |
| AT1G43080
| PredictedAffinity Capture-MSCo-crystal StructureCo-crystal StructureAffinity Capture-MS | FSW = 0.1976
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
| AT1G55730
| PredictedAffinity Capture-MS | FSW = 0.3106
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
| AT2G03410
| PredictedAffinity Capture-MS | FSW = 0.1522
| Unknown | MO25 FAMILY PROTEIN |
| AT2G31020
| PredictedAffinity Capture-MS | FSW = 0.0576
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
| AT2G41530
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3613
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
| AT2G47970
| PredictedAffinity Capture-MS | FSW = 0.1393
| Unknown | NPL4 FAMILY PROTEIN |
| AT3G12690
| PredictedAffinity Capture-MS | FSW = 0.5291
| Unknown | AGC15 (AGC KINASE 15) KINASE |
| AT3G18660
| PredictedAffinity Capture-MS | FSW = 0.0755
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
| AT3G23570
| PredictedAffinity Capture-MS | FSW = 0.3800
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
| AT3G53510
| PredictedAffinity Capture-MS | FSW = 0.2664
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
| AT3G53730
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2270
| Unknown | HISTONE H4 |
| AT3G59410
| PredictedAffinity Capture-MS | FSW = 0.2893
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT4G16710
| PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | GLYCOSYLTRANSFERASE FAMILY PROTEIN 28 |
| AT4G17380
| PredictedAffinity Capture-MS | FSW = 0.1289
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
| AT5G17000
| PredictedAffinity Capture-MS | FSW = 0.1590
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
| AT5G19150
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2616
| Unknown | CARBOHYDRATE KINASE FAMILY |
| AT5G19660
| PredictedAffinity Capture-MS | FSW = 0.4399
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
| AT5G26250
| PredictedAffinity Capture-Western | FSW = 0.0070
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT5G27640
| PredictedAffinity Capture-MS | FSW = 0.1945
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
| AT5G28470
| PredictedAffinity Capture-MS | FSW = 0.0661
| Unknown | TRANSPORTER |
| AT5G59440
| PredictedAffinity Capture-MStwo hybridAffinity Capture-MSCo-crystal Structuresynthetic growth defect | FSW = 0.1345
| Unknown | ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE |
| AT3G62770
| PredictedAffinity Capture-MS | FSW = 0.4001
| Unknown | ATATG18A |
| AT4G17770
| PredictedAffinity Capture-MS | FSW = 0.4683
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
| AT4G25860
| PredictedAffinity Capture-MS | FSW = 0.4820
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
| AT4G26810
| PredictedAffinity Capture-MS | FSW = 0.2403
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
| AT4G35620
| PredictedAffinity Capture-MS | FSW = 0.2206
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT4G39330
| PredictedAffinity Capture-MS | FSW = 0.4376
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
| AT5G09630
| PredictedAffinity Capture-MS | FSW = 0.4892
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
| AT5G19820
| PredictedAffinity Capture-MS | FSW = 0.4622
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
| AT5G41190
| PredictedAffinity Capture-MS | FSW = 0.3954
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
| AT5G49840
| PredictedAffinity Capture-MS | FSW = 0.0094
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G54200
| PredictedAffinity Capture-MS | FSW = 0.2434
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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