Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G25780 - ( pathogenesis-related protein putative )
51 Proteins interacs with AT4G25780Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G13560 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1523
| Class C:extracellular | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G02730 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0073
| Class C:extracellular | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G17730 | PredictedAffinity Capture-MS | FSW = 0.0327
| Unknown | SYP23 (SYNTAXIN OF PLANTS 23) SNAP RECEPTOR |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.2096
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G26590 | Predictedbiochemical | FSW = 0.0152
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0318
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G16950 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2679
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.0471
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G31910 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-Westerntwo hybrid | FSW = 0.0731
| Unknown | ATCHX21 (CATION/H+ EXCHANGER 21) SODIUMHYDROGEN ANTIPORTER |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.2637
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT1G80030 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0736
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.1746
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G27970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2281
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G33370 | Predictedtwo hybridAffinity Capture-Westerntwo hybridReconstituted Complex | FSW = 0.0337
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
AT3G47960 | PredictedAffinity Capture-MS | FSW = 0.0474
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.2286
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT5G23900 | PredictedAffinity Capture-MS | FSW = 0.0632
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.2713
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.2529
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G02680 | PredictedAffinity Capture-MS | FSW = 0.0489
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G36170 | PredictedAffinity Capture-MS | FSW = 0.0175
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.1521
| Unknown | HISTONE H2B PUTATIVE |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.1929
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.2423
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1212
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT4G29430 | PredictedAffinity Capture-MS | FSW = 0.2582
| Unknown | RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G30800 | Predictedtwo hybridReconstituted Complextwo hybridtwo hybridAffinity Capture-WesternReconstituted ComplexAffinity Capture-Westerntwo hybrid | FSW = 0.0108
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.1224
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G04480 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MStwo hybrid | FSW = 0.1825
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23A) |
AT1G27320 | PredictedAffinity Capture-MS | FSW = 0.0070
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.3769
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.2313
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT2G02020 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerntwo hybrid | FSW = 0.0226
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.1814
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0755
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G36190 | PredictedAffinity Capture-MS | FSW = 0.0935
| Unknown | ATCWINV4 (ARABIDOPSIS THALIANA CELL WALL INVERTASE 4) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.1699
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.2209
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.1624
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.2170
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1938
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.1655
| Unknown | ATATG18A |
AT4G19880 | PredictedAffinity Capture-MS | FSW = 0.0154
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
AT4G24160 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN |
AT1G63370 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1452
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.1255
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G39330 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2679
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G13150 | PredictedAffinity Capture-MS | FSW = 0.0428
| Unknown | ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.1488
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G56670 | PredictedAffinity Capture-MS | FSW = 0.0385
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30C) |
AT5G57330 | PredictedAffinity Capture-MS | FSW = 0.0852
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454