Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G64480 - ( CBL8 (CALCINEURIN B-LIKE PROTEIN 8) calcium ion binding )
98 Proteins interacs with AT1G64480Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G01820 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0207
| Unknown | ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G30270 | Experimentaltwo hybrid | FSW = 0.0239
| Unknown | CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.6829
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.5662
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT3G08710 | PredictedAffinity Capture-MS | FSW = 0.1812
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT3G56190 | PredictedAffinity Capture-MS | FSW = 0.3855
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.5742
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.6203
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.6285
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.6043
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.5178
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.6161
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.5917
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT2G31170 | PredictedAffinity Capture-MS | FSW = 0.2326
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G26970 | PredictedAffinity Capture-MS | FSW = 0.2522
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.2627
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.5396
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.3718
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.1720
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT3G06040 | PredictedAffinity Capture-MS | FSW = 0.5157
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.4744
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G23740 | PredictedAffinity Capture-MS | FSW = 0.5694
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.6536
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT3G13560 | PredictedAffinity Capture-MS | FSW = 0.1474
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.4898
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.6161
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G22120 | PredictedAffinity Capture-MS | FSW = 0.2308
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.4212
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT5G12350 | PredictedAffinity Capture-MS | FSW = 0.1538
| Unknown | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.6253
| Unknown | ZINC ION BINDING |
AT5G47100 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0274
| Unknown | CBL9 CALCIUM ION BINDING |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.5472
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT4G00520 | PredictedAffinity Capture-MS | FSW = 0.0509
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.5435
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.5914
| Unknown | HTA6 DNA BINDING |
AT2G23930 | PredictedAffinity Capture-MS | FSW = 0.0192
| Unknown | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.5917
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.4985
| Unknown | HISTONE H2B PUTATIVE |
AT5G47630 | PredictedAffinity Capture-MS | FSW = 0.0128
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT3G20970 | PredictedAffinity Capture-MS | FSW = 0.1545
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.2130
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.5922
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.4791
| Unknown | BINDING |
AT4G25780 | PredictedAffinity Capture-MS | FSW = 0.2313
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.5983
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.5868
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.6469
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.4767
| Unknown | PSF2 |
AT5G24270 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0207
| Unknown | SOS3 (SALT OVERLY SENSITIVE 3) CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.5203
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT4G01420 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0601
| Unknown | CBL5 (CALCINEURIN B-LIKE PROTEIN 5) CALCIUM ION BINDING |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.3314
| Unknown | UNKNOWN PROTEIN |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.6856
| Unknown | UNKNOWN PROTEIN |
AT1G62880 | PredictedSynthetic LethalityAffinity Capture-MSinterologs mapping | FSW = 0.6788
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.5233
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.4795
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G33110 | PredictedAffinity Capture-MS | FSW = 0.5106
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.4105
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G76720 | PredictedAffinity Capture-MS | FSW = 0.5859
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.2182
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.3725
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.1930
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G41530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3456
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.3221
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G47570 | PredictedAffinity Capture-MS | FSW = 0.1048
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.4614
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G11900 | PredictedAffinity Capture-MS | FSW = 0.2402
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0506
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.6122
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.5511
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.5203
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.5679
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.5335
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G53510 | PredictedAffinity Capture-MS | FSW = 0.3135
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT3G53730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1993
| Unknown | HISTONE H4 |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.1930
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G63280 | PredictedAffinity Capture-MS | FSW = 0.0370
| Unknown | ATNEK4 (NIMA-RELATED KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.5907
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT5G05420 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | IMMUNOPHILIN PUTATIVE / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.5606
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G15070 | PredictedAffinity Capture-MS | FSW = 0.0403
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.5775
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.6077
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.5452
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.3918
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.3606
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G42160 | PredictedAffinity Capture-MS | FSW = 0.2576
| Unknown | ZINC FINGER (UBIQUITIN-HYDROLASE) DOMAIN-CONTAINING PROTEIN |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.6228
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.4683
| Unknown | ATATG18A |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.5412
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.3891
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G26810 | PredictedAffinity Capture-MS | FSW = 0.2514
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.5709
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.1372
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.4904
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.4903
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.3149
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT4G26560 | PredictedGene fusion methodCo-expression | FSW = 0.0504
| Unknown | CBL7 (CALCINEURIN B-LIKE 7) CALCIUM ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454