Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G19940 - ( sugar transporter putative )
121 Proteins interacs with AT3G19940Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.5364
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT2G48020 | PredictedPhylogenetic profile method | FSW = 0.2818
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.4470
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT3G08710 | PredictedAffinity Capture-MS | FSW = 0.1621
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT3G56190 | PredictedAffinity Capture-MS | FSW = 0.3532
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G11260 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2297
| Unknown | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.4914
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.5191
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G03090 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3094
| Unknown | ATVGT1 (ARABIDOPSIS THALIANA VACUOLAR GLUCOSE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ FRUCTOSE TRANSMEMBRANE TRANSPORTER/ GLUCOSE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G19450 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2625
| Unknown | INTEGRAL MEMBRANE PROTEIN PUTATIVE / SUGAR TRANSPORTER FAMILY PROTEIN |
AT1G75220 | PredictedPhylogenetic profile method | FSW = 0.2625
| Unknown | INTEGRAL MEMBRANE PROTEIN PUTATIVE |
AT3G62870 | Predictedsynthetic growth defecttwo hybrid | FSW = 0.0465
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G26030 | Predictedtwo hybrid | FSW = 0.0123
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.5382
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.4521
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.4385
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.5061
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G61520 | PredictedGene fusion methodCo-expression | FSW = 0.0895
| Unknown | HEXOSE TRANSPORTER PUTATIVE |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.5113
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT4G26970 | PredictedAffinity Capture-MS | FSW = 0.1548
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT5G59250 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3097
| Unknown | SUGAR TRANSPORTER FAMILY PROTEIN |
AT1G07420 | Predictedtwo hybridinteraction prediction | FSW = 0.0047
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.1986
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.5034
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT1G80030 | PredictedSynthetic Lethality | FSW = 0.1011
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.3090
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G17745 | Predictedinteraction prediction | FSW = 0.0094
| Unknown | PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.3915
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G45420 | PredictedAffinity Capture-MS | FSW = 0.4642
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT5G23740 | PredictedAffinity Capture-MS | FSW = 0.4488
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.5018
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT3G61430 | PredictedAffinity Capture-MS | FSW = 0.0899
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT2G21540 | PredictedAffinity Capture-MS | FSW = 0.1280
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT3G18830 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3150
| Unknown | ATPLT5 (POLYOL TRANSPORTER 5) D-RIBOSE TRANSMEMBRANE TRANSPORTER/ D-XYLOSE TRANSMEMBRANE TRANSPORTER/ CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ GALACTOSE TRANSMEMBRANE TRANSPORTER/ GLUCOSE TRANSMEMBRANE TRANSPORTER/ GLYCEROL TRANSMEMBRANE TRANSPORTER/ MANN |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.4173
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.5269
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G50310 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3320
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G19930 | PredictedGene fusion methodCo-expression | FSW = 0.0442
| Unknown | STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.1812
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT4G02050 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1514
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.3567
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT5G23270 | PredictedPhenotypic EnhancementGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3433
| Unknown | STP11 (SUGAR TRANSPORTER 11) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G20760 | PredictedAffinity Capture-MS | FSW = 0.1252
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.5492
| Unknown | ZINC ION BINDING |
AT2G18040 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0023
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.4168
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.4022
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT2G30260 | PredictedAffinity Capture-MS | FSW = 0.0168
| Unknown | U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.0746
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.5136
| Unknown | HTA6 DNA BINDING |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.4541
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT1G03190 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0029
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.4116
| Unknown | HISTONE H2B PUTATIVE |
AT3G55605 | PredictedAffinity Capture-MS | FSW = 0.0203
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.1177
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.4303
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.4784
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.3963
| Unknown | BINDING |
AT4G25780 | PredictedAffinity Capture-MS | FSW = 0.2209
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G05150 | PredictedPhylogenetic profile method | FSW = 0.2744
| Unknown | SUGAR TRANSPORTER FAMILY PROTEIN |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.5243
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.4510
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.5534
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.3976
| Unknown | PSF2 |
AT5G49060 | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT5G47880 | PredictedAffinity Capture-MS | FSW = 0.4507
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
AT1G51770 | PredictedAffinity Capture-MS | FSW = 0.5622
| Unknown | UNKNOWN PROTEIN |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.5758
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.5511
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.4525
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.4714
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT2G16740 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.1727
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.2574
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.2616
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.3315
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G29390 | PredictedAffinity Capture-MS | FSW = 0.3153
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT2G42160 | PredictedAffinity Capture-MS | FSW = 0.2328
| Unknown | ZINC FINGER (UBIQUITIN-HYDROLASE) DOMAIN-CONTAINING PROTEIN |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.5113
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT1G05000 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0242
| Unknown | TYROSINE SPECIFIC PROTEIN PHOSPHATASE FAMILY PROTEIN |
AT1G08750 | Predictedtwo hybridinteraction prediction | FSW = 0.0047
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.4529
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G11930 | PredictedAffinity Capture-MS | FSW = 0.0068
| Unknown | ALANINE RACEMASE FAMILY PROTEIN |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.3959
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.2959
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G49490 | PredictedAffinity Capture-MS | FSW = 0.0052
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN |
AT1G50030 | Predictedco-fractionationCo-fractionation | FSW = 0.0096
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.3767
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.4214
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.5357
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.4527
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.4775
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.5027
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT5G04510 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0063
| Unknown | PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE/ KINASE/ PHOSPHOINOSITIDE BINDING / PROTEIN BINDING / PROTEIN KINASE |
AT5G09630 | PredictedAffinity Capture-MS | FSW = 0.4639
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1304
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.4286
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G19680 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0040
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.1911
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.3893
| Unknown | ATATG18A |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.4444
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.3049
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.4923
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.3758
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.4207
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.2802
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT3G19020 | Predictedinteraction prediction | FSW = 0.0081
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN / EXTENSIN FAMILY PROTEIN |
AT1G08930 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3035
| Unknown | ERD6 (EARLY RESPONSE TO DEHYDRATION 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGAR TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G54730 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2978
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT4G21480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0494
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G18840 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2922
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT1G79820 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2545
| Unknown | SGB1 (SUPPRESSOR OF G PROTEIN BETA1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G05030 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3374
| Unknown | HEXOSE TRANSPORTER PUTATIVE |
AT4G04750 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2978
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G18480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3383
| Unknown | MANNITOL TRANSPORTER PUTATIVE |
AT3G05400 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2328
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT2G16120 | PredictedPhylogenetic profile method | FSW = 0.1988
| Unknown | MANNITOL TRANSPORTER PUTATIVE |
AT3G05165 | PredictedPhylogenetic profile method | FSW = 0.2744
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT2G20780 | PredictedPhylogenetic profile method | FSW = 0.2741
| Unknown | MANNITOL TRANSPORTER PUTATIVE |
AT4G36670 | PredictedPhylogenetic profile method | FSW = 0.2806
| Unknown | MANNITOL TRANSPORTER PUTATIVE |
AT3G05160 | PredictedPhylogenetic profile method | FSW = 0.2861
| Unknown | SUGAR TRANSPORTER PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454