Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G19680 - ( leucine-rich repeat family protein )
29 Proteins interacs with AT5G19680Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63310 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE/ PROTEIN BINDING |
AT5G22330 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0076
| Unknown | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT3G55200 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0218
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G17260 | PredictedAffinity Capture-MS | FSW = 0.0606
| Unknown | AHA10 (AUTOINHIBITED H(+)-ATPASE ISOFORM 10) ATPASE/ ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CATION-TRANSPORTING ATPASE |
AT3G03330 | PredictedGene fusion method | FSW = 0.0334
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G04690 | PredictedGene fusion method | FSW = 0.0263
| Unknown | KAB1 (POTASSIUM CHANNEL BETA SUBUNIT) OXIDOREDUCTASE/ POTASSIUM CHANNEL |
AT3G60330 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0606
| Unknown | AHA7 (ARABIDOPSIS H(+)-ATPASE 7) HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM |
AT5G65940 | PredictedGene fusion method | FSW = 0.0200
| Unknown | CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) 3-HYDROXYISOBUTYRYL-COA HYDROLASE |
AT2G25880 | PredictedSynthetic Rescue | FSW = 0.0649
| Unknown | ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE |
AT2G45490 | Predictedinterologs mappingSynthetic Rescueinterologs mapping | FSW = 0.0741
| Unknown | ATAUR3 (ATAURORA3) ATP BINDING / HISTONE KINASE(H3-S10 SPECIFIC) / PROTEIN KINASE |
AT3G54610 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT4G30860 | PredictedSynthetic Lethality | FSW = 0.0649
| Unknown | SDG4 (SET DOMAIN GROUP 4) HISTONE METHYLTRANSFERASE |
AT1G48920 | PredictedAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.0152
| Unknown | ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G09020 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0165
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT2G31305 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.2667
| Unknown | INH3 (INHIBITOR-3) |
AT2G39840 | Predictedinterologs mappingtwo hybridAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSinterologs mappinginterologs mappingtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSinterologs mappingAffinity Capture-WesternAffinity Capture-MStwo hybridinteraction prediction | FSW = 0.0648
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G01090 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G08850 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | RAPTOR1 NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G19940 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0040
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G55220 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | SPLICING FACTOR PUTATIVE |
AT2G29400 | Predictedinterologs mappinginterologs mappinginterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.0386
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G01770 | Predictedinteraction prediction | FSW = 0.0045
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G66240 | PredictedGene fusion method | FSW = 0.1364
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G04190 | PredictedGene fusion method | FSW = 0.0539
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT3G19950 | PredictedGene fusion method | FSW = 0.0539
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G17890 | PredictedGene fusion method | FSW = 0.0275
| Unknown | GER2 BINDING / CATALYTIC/ COENZYME BINDING |
AT2G46280 | PredictedGene fusion method | FSW = 0.0265
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G17170 | PredictedGene fusion method | FSW = 0.0256
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G40830 | PredictedGene fusion method | FSW = 0.0539
| Unknown | RHC1A PROTEIN BINDING / ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454