Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G22330 - ( RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) protein binding )
63 Proteins interacs with AT5G22330| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G67630
   | Predictedtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-WesternCo-purificationReconstituted ComplexCo-crystal Structurebiochemicalinteraction predictionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3546
| Class C:plastidnucleus | DNA HELICASE PUTATIVE |
| AT5G59690 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1113
| Class C:plastidnucleus | HISTONE H4 |
| AT1G49240
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0871
| Class C:plastid | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0500
| Class C:plastid | HISTONE H4 |
| AT1G29900
| PredictedAffinity Capture-MS | FSW = 0.0321
| Class C:plastid | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
| AT3G49830
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridPhylogenetic profile methodCo-expression | FSW = 0.2558
| Class C:plastid | DNA HELICASE-RELATED |
| AT2G28190
| PredictedPhenotypic Enhancement | FSW = 0.0600
| Class C:plastid | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
| AT2G06510
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0145
| Class C:nucleus | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
| AT1G16970
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0286
| Class C:nucleus | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
| AT5G14960
| PredictedAffinity Capture-MS | FSW = 0.0269
| Class C:nucleus | DEL2 (DP-E2F-LIKE 2) DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G12810
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted Complex | FSW = 0.1261
| Class C:nucleus | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT5G54840
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0129
| Class C:nucleus | SGP1 GTP BINDING |
| AT3G05060
| PredictedAffinity Capture-MS | FSW = 0.0411
| Class C:nucleus | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT1G18450
| PredictedAffinity Capture-Westernco-fractionationCo-fractionationin vivoCo-expression | FSW = 0.1200
| Class C:nucleus | ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT3G57300
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1203
| Class C:nucleus | INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT5G18620
| PredictedAffinity Capture-MS | FSW = 0.0468
| Class C:nucleus | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
| AT3G48160
| PredictedAffinity Capture-MS | FSW = 0.0242
| Class C:nucleus | DEL1 (DP-E2F-LIKE 1) DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G17790
| PredictedAffinity Capture-MS | FSW = 0.0906
| Class C:nucleus | DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN |
| AT3G21700
| PredictedAffinity Capture-MS | FSW = 0.0121
| Class C:nucleus | SGP2 GTP BINDING |
| AT3G13445
| PredictedReconstituted ComplexReconstituted ComplexAffinity Capture-Western | FSW = 0.0347
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT1G55520
| PredictedReconstituted ComplexReconstituted ComplexAffinity Capture-Western | FSW = 0.0626
| Class C:nucleus | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
| AT2G36740
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0833
| Class C:nucleus | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G47210
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2325
| Class C:nucleus | MYB FAMILY TRANSCRIPTION FACTOR |
| AT2G13370
| PredictedAffinity Capture-MS | FSW = 0.0986
| Class C:nucleus | CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT3G22110
| PredictedPhenotypic Enhancement | FSW = 0.0329
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT4G38495
| PredictedAffinity Capture-MS | FSW = 0.1200
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YL1 NUCLEAR C-TERMINAL (INTERPROIPR013272) HAS 189 BLAST HITS TO 189 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 80 FUNGI - 83 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 9 (SOURCE NCBI BLINK) |
| AT3G12110
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1168
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT1G11890
| PredictedPhenotypic Enhancement | FSW = 0.0523
| Unknown | SEC22 TRANSPORTER |
| AT1G07670
| PredictedAffinity Capture-MS | FSW = 0.0202
| Unknown | CALCIUM-TRANSPORTING ATPASE |
| AT5G52640
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0195
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT2G42500
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0268
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT1G10430
| PredictedAffinity Capture-MS | FSW = 0.0223
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT5G19330
| PredictedReconstituted ComplexAffinity Capture-WesternPhenotypic Suppression | FSW = 0.0445
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
| AT1G10130
| PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
| AT4G34650
| PredictedAffinity Capture-MS | FSW = 0.0768
| Unknown | SQS2 (SQUALENE SYNTHASE 2) FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE |
| AT1G53300
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1046
| Unknown | TTL1 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 1) BINDING |
| AT5G63860
| PredictedAffinity Capture-MS | FSW = 0.0646
| Unknown | UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| AT1G44120
| PredictedPhenotypic Suppression | FSW = 0.0316
| Unknown | C2 DOMAIN-CONTAINING PROTEIN / ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
| AT2G17930
| PredictedAffinity Capture-Western | FSW = 0.1083
| Unknown | BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
| AT4G36080 | PredictedAffinity Capture-Western | FSW = 0.1257
| Unknown | FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN |
| AT2G02570
| PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | NUCLEIC ACID BINDING |
| AT4G27650
| PredictedAffinity Capture-MS | FSW = 0.0358
| Unknown | PEL1 (PELOTA) TRANSLATION RELEASE FACTOR |
| AT5G27140
| PredictedAffinity Capture-MS | FSW = 0.0325
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT1G08880
| PredictedAffinity Capture-WesternPhenotypic Suppression | FSW = 0.0991
| Unknown | H2AXA DNA BINDING |
| AT1G60170
| Predictedtwo hybrid | FSW = 0.0112
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
| AT3G12380
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2162
| Unknown | ATARP5 (ACTIN-RELATED PROTEIN 5) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT1G02080 | PredictedAffinity Capture-MS | FSW = 0.0493
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
| AT1G52740
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1652
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
| AT3G10530
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0084
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G27000
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0462
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
| AT3G58560
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0436
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
| AT5G10260
| PredictedPhenotypic Enhancement | FSW = 0.0457
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
| AT5G19680
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0076
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
| AT5G40440
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0234
| Unknown | ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3) MAP KINASE KINASE |
| AT5G43500
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1226
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
| AT5G45600
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1297
| Unknown | GAS41 PROTEIN BINDING |
| AT5G50430
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0244
| Unknown | UBC33 (UBIQUITIN-CONJUGATING ENZYME 33) UBIQUITIN-PROTEIN LIGASE |
| AT5G61150
| PredictedPhenotypic Enhancement | FSW = 0.0781
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
| AT2G18000
| PredictedAffinity Capture-MS | FSW = 0.1067
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
| AT1G17280
| PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | UBC34 (UBIQUITIN-CONJUGATING ENZYME 34) UBIQUITIN-PROTEIN LIGASE |
| AT1G77460
| Predictedin vitroin vivo | FSW = 0.0220
| Unknown | BINDING |
| AT1G03760
| Predictedin vivo | FSW = 0.0856
| Unknown | PREFOLDIN SUBUNIT FAMILY PROTEIN |
| AT5G50900
| PredictedPhenotypic Suppression | FSW = 0.0269
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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